| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041P09 | Sequence | 659 | 011608 (5) | ref|XP_006365595.1| | 108 | PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum] | 614 | 002665 (5) | emb|CDP06483.1| | 3e-33 | unnamed protein product [Coffea canephora] |
| JMFF048L15 | Sequence | 398 | 011608 (5) | ref|XP_009796832.1| | 2e-06 | PREDICTED: uncharacterized protein LOC104243355 isoform X1 [Nicotiana sylvestri | 338 | 002665 (5) | |||
| JMSF001N05 | Sequence | 419 | 011608 (5) | ref|XP_006365595.1| | 89.0 | PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum] | 677 | 002665 (5) | emb|CDP06483.1| | 4e-43 | unnamed protein product [Coffea canephora] |
| JMSF019E11 | Sequence | 506 | 011608 (5) | ref|XP_006365595.1| | 99.0 | PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum] | 774 | 002665 (5) | emb|CDP06483.1| | 1e-45 | unnamed protein product [Coffea canephora] |
| JMSF035L16 | Sequence | 654 | 011608 (5) | ref|XP_009796832.1| | 6e-39 | PREDICTED: uncharacterized protein LOC104243355 isoform X1 [Nicotiana sylvestri | 310 | 002665 (5) | |||
This contig is upended
. : . : . : . : . : . :
rJMSF019E11+ CACATACT
____________________________________________________________
consensus CACATACT
. : . : . : . : . : . :
rJMSF001N05+ TTGTGTTCCTGGCCCAGCGTATCCTAAATAATC
rJMSF019E11+ TTCTTGGCATAGGNGGAACGTGTTTTTTTGTGTTCCTGGCCCAGCGTATCCTAAATAATN
____________________________________________________________
consensus TTCTTGGCATAGGNGGAACGTGTTTTTTTGTGTTCCTGGCCCAGCGTATCCTAAATAATC
. : . : . : . : . : . :
rJMSF001N05+ TGCATCGTAGAGCACAATTAGAAGATACTGGATCTGAACGGGTCCCTATGCTTTCGGACA
rJMSF019E11+ TGCATCGTAGAGCACAATTAGAAGATACTGGATCTGAACGGGTCCCTATGCTTTCGGACA
____________________________________________________________
consensus TGCATCGTAGAGCACAATTAGAAGATACTGGATCTGAACGGGTCCCTATGCTTTCGGACA
. : . : . : . : . : . :
rJMSF001N05+ AACAAGATGACAACTTGAGTTTGGGTTCTTCTTACTGTTCTCTTTCTCAAGATGATGAGG
rJMSF019E11+ AACAAGATGACAACTTGAGTTTGGGTTCTTCTTACTGTTCTCTTTCTCAAGATGATGAGG
rJMFF041P09+ TTCTCAAGATGATGAGG
____________________________________________________________
consensus AACAAGATGACAACTTGAGTTTGGGTTCTTCTTACTGTTCTCTTTCTCAAGATGATGAGG
. : . : . : . : . : . :
rJMSF001N05+ ATGCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCAGTAAAAGACAGTGAGC
rJMSF019E11+ ATGCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCNGTAAAAGACAGTGAGC
rJMFF041P09+ ATGCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCAGTAAAAGACAGTGAGC
____________________________________________________________
consensus ATGCTGAAGAGCCAACAAGCAGCAGTACGCTTGATGGGAAGCCAGTAAAAGACAGTGAGC
. : . : . : . : . : . :
rJMSF001N05+ AGAGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTNTTCC
rJMSF019E11+ AGAGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTNTTCC
rJMFF041P09+ AGAGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTCTTCC
____________________________________________________________
consensus AGAGCGATATGCGTCATCTCTGTGCAATTTGCTTTGATGCACCAAGGGACTGTTTCTTCC
. : . : . : . : . : . :
rJMSF001N05+ TCCCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTG
rJMSF019E11+ TCCCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTG
rJMSF035L16+ CTGCTTGTCCNGTTTTGAATGNGGAACCNAGATAGCNGAGACGGNTG
rJMFF041P09+ TCCCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTG
____________________________________________________________
consensus TCCCATGCGGACACTGCTTGTCCTGTTTTGAATGCGGAACCAAGATAGCAGAGACGGCTG
. : . : . : . : . : . :
rJMSF001N05+ GTACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAA
rJMSF019E11+ GTACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAA
rJMFF048L15+ AAGGTGAAGAAGATATATACTGTTTGAA
rJMSF035L16+ GTACTTGCCCTGTANGTNGCNGGNGCNTGAAGAAGGTGAAGAAGATATNTACTGTTTGAA
rJMFF041P09+ GTACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAA
____________________________________________________________
consensus GTACTTGCCCTGTATGTCGCAGGCGCATGAAGAAGGTGAAGAAGATATATACTGTTTGAA
. : . : . : . : . : . :
rJMSF001N05+ CATCCCTTATGGACTTGCCACCTCTGTCGCCAATNTGCTGNGTATATACTGTTTGTATCA
rJMSF019E11+ CATCCCTTATGGACTTGCCACCTCTGTCGCCAATNTGCTGNGTATATACTGTTTGTATCA
rJMFF048L15+ CATCCCTTATGGACTTGCCACCTCTGTCGCCAATCTGCGGGGTATATACCGTTTGTATCA
rJMSF035L16+ CATCCCTTATGGACTTGCCNCCTNTGTCGCCAATTTGCTGGGTATATACNGTTTGTATCN
rJMFF041P09+ CATCCCTTATGGACTTGCCACCTCTGTCGCCAATCTGCTGTGTATATACTGTTTGTATCA
____________________________________________________________
consensus CATCCCTTATGGACTTGCCACCTCTGTCGCCAATCTGCTGGGTATATACTGTTTGTATCA
. : . : . : . : . : . :
rJMSF001N05+ TTGTATTCTTGTCAATGTGATAGGCAGGCCCTNTGCCCTTTCCGCCCACCGGTAGCCTTT
rJMSF019E11+ TTGTATTCTTGTCAATGTGATAGGCAGGCCCTNTGCCCTTTCCGCCCACCGGTAGCCTTT
rJMFF048L15+ TTGTATTCTTGTCAATGTGATAGGCAGGCCCTCTGCCCTTTCCGCCCACCGGTAGCCTTT
rJMSF035L16+ TTGTATTNTTGTCAANGNGATAGGCNGGCCCTTTGCCCTTTNCGCCCNCCGGTAGCCTTT
rJMFF041P09+ TTGTATTCTTGTCAATGTGATAGGCAGGCCCTCTGCCCTTTCCGCCCACCGGTAGCCTTT
____________________________________________________________
consensus TTGTATTCTTGTCAATGTGATAGGCAGGCCCTCTGCCCTTTCCGCCCACCGGTAGCCTTT
. : . : . : . : . : . :
rJMSF001N05+ TNTTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATAT
rJMSF019E11+ TNTTATAAGGGAAACACGTATTTTTTCTGNGACTGACTTGAATATTTGA-AGCTGCGCCC
rJMFF048L15+ TCTTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATCTGATAGCTGCGCCC
rJMSF035L16+ TTTTNTAAGGGAAACNCGTATTTTTTNTGNGACTGACTTGAATATTTGA-AGNTGCGCCC
rJMFF041P09+ TCTTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATTTGA-AGCTGCGCCC
____________________________________________________________
consensus TCTTATAAGGGAAACACGTATTTTTTCTGTGACTGACTTGAATATTTGA-AGCTGCGCCC
. : . : . : . : . : . :
rJMSF019E11+ -AACGTCG-GACGACTTTGTACTTNTCAGTGATAGTGAGGNGGTTCAAAGATACCAGGTT
rJMFF048L15+ TAACGTCGCTACGACTTTGTACCTCGTAGTGATAGTGAGGTGGTTCAAAGATACCAGGTT
rJMSF035L16+ -AACGTCG-GNCGACTTTGTACTT
rJMFF041P09+ -AACGTCG-GACGACTTTGTACTTCTCAGTGATAGTGAGGTGGTTCAAAGATACCAGGTT
____________________________________________________________
consensus -AACGTCG-GACGACTTTGTACTTCTCAGTGATAGTGAGGTGGTTCAAAGATACCAGGTT
. : . : . : . : . : . :
rJMSF019E11+ GGNGATGATAGTTAAACGATGTATATTGAACTTGTAAAACC-CCTAGTA-TTTTTTTTTT
rJMFF048L15+ GGTGATGACTCTTCTACGATGTATATTGAACTTGTAAAACC
rJMFF041P09+ GGTGATGATAGTTAAACGATGTATATTGAACTTGTAAAACCNCCTAGTATTTTTTTTTTT
____________________________________________________________
consensus GGTGATGATAGTTAAACGATGTATATTGAACTTGTAAAACCNCCTAGTATTTTTTTTTTT
. : . : . : . : . : . :
rJMSF019E11+ TAATGTTATCCTGCAACGTTTATTTGTCTTCCCTCTAGTACACTCAAATCT
rJMFF041P09+ TAATGTTATCCTGCAACGTTTATTTGTCTTCCCTCTAGTACACTCAAATCTTAGTGGTCG
____________________________________________________________
consensus TAATGTTATCCTGCAACGTTTATTTGTCTTCCCTCTAGTACACTCAAATCTTAGTGGTCG