Contig 002664:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016C24Sequence556007362 (8)ref|XP_009795696.1|1e-35PREDICTED: polyadenylate-binding protein RBP45 [Nicotiana sylvestris]778002664 (10)ref|XP_006346222.1|1e-67PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF016N14Sequence556007362 (8)gb|EYU33637.1|3e-26hypothetical protein MIMGU_mgv1a007175mg [Erythranthe guttata]659002664 (10)ref|XP_006346222.1|4e-39PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF020P12Sequence482007362 (8)sp|Q9LEB4.1|RBP45_NICPL2e-20RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei757002664 (10)ref|XP_006346222.1|2e-59PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF022F11Sequence512007362 (8)sp|Q9LEB4.1|RBP45_NICPL1e-27RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei697002664 (10)ref|XP_006346222.1|1e-42PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF025F08Sequence554007362 (8)sp|Q9LEB4.1|RBP45_NICPL6e-37RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei708002664 (10)ref|XP_006346222.1|2e-60PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF041O11Sequence662007362 (8)ref|XP_006346222.1|1e-57PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]551002664 (10)ref|XP_006346222.1|4e-18PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF044C11Sequence646007362 (8)ref|XP_006346222.1|1e-56PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]312002664 (10)
JMFN039M24Sequence535002664 (10)ref|XP_006346222.1|4e-12PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMSF015A07Sequence396007362 (8)ref|XP_009795696.1|8e-05PREDICTED: polyadenylate-binding protein RBP45 [Nicotiana sylvestris]798002664 (10)ref|XP_006346222.1|9e-88PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMSF052F10Sequence518008107 (5)782002664 (10)ref|XP_006346222.1|1e-65PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF015A07+                        CTATGGGTTTGTTAGGTTTGGGGATGAGAGTGATCAATTGCGCGCC
                      ____________________________________________________________
consensus                           CTATGGGTTTGTTAGGTTTGGGGATGAGAGTGATCAATTGCGCGCC
 
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rJMSF015A07+          ATGACTGAAATGAATGGTGTGGTGTG-CTCATCTAGGCCCATGAGGATTGGACCAGCTGC
rJMSF052F10+                GAAATGAATGGTGTGGTGTGCCTCATNTAGGCCCATGANGATTGGACCAGNTGC
rJMFF016C24+                                           TAGGCCCATGAGGATNGGACCAGCTGC
                      ____________________________________________________________
consensus             ATGACTGAAATGAATGGTGTGGTGTGCCTCATCTAGGCCCATGAGGATTGGACCAGCTGC
 
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rJMSF015A07+          TAACAAGAACCTTGTGAATACGCAGCAGAAAGCTACGTATCAAAGTTCACAAGCTGGTCA
rJMSF052F10+          TAACAAGAACCTTGTGAATACGCAGCAGAAAGCTACGTATCAAAGTTCACAAGCTGGTCA
rJMFF025F08+                        TGAATACGCAGCAGAAAGCTACGTATCAAAGTTCACAAGCTGGTCA
rJMFF016C24+          TAACAAGAACCTTGTGAATACGCAGCAGAAAGCTACGTATCAAAGTTCACAAGCTGGTCA
rJMFF020P12+                             ACGCAGCAGAAAGCTACGTATCAAAGTTCACAAGCTGGTCA
                      ____________________________________________________________
consensus             TAACAAGAACCTTGTGAATACGCAGCAGAAAGCTACGTATCAAAGTTCACAAGCTGGTCA
 
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rJMSF015A07+          AGGCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGA-CCCCAATGTTT
rJMSF052F10+          AGGCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTNTGGA-CCCCAATGTTT
rJMFF025F08+          AGGCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGA-CCCCAATGTTT
rJMFF016C24+          AGGCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGA-CCCCAATGTTT
rJMFF022F11+            GCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGACCCCCAATGTTT
rJMFF016N14+                                                                    TT
rJMFF020P12+          AGGCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGA-CCCCAATGTTT
                      ____________________________________________________________
consensus             AGGCGACAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGA-CCCCAATGTTT
 
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rJMSF015A07+          CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
rJMSF052F10+          CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
rJMFF025F08+          CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
rJMFF016C24+          CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
rJMFF022F11+          CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
rJMFF016N14+          CAGAGGAGCTTATGAGGCAAGTATTTTCACTTTATGGTGAACTTGTTCATGTCAAAATAG
rJMFF020P12+          CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
                      ____________________________________________________________
consensus             CAGAGGAGCTTATGAGGCAAGTATTTTCACCTTATGGTGAACTTGTTCATGTCAAAATAG
 
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rJMSF015A07+          TTGCGGCTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
rJMSF052F10+          TTGCGGNTAAGCGCTGTGGTTTTGTTCAGTTTTNTAACAGGCCTTCTNCTGAGCATGCTT
rJMFF025F08+          TTGCGGCTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
rJMFF016C24+          TTGCGGCTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
JMFN039M24-                                                      TTCTGCTGAGCATGCTT
rJMFF022F11+          TTGCGGCTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
rJMFF016N14+          TTGCGGNTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
rJMFF020P12+          TTGCGGCTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
rJMFF041O11+                                                         GCTGAGCATGCTT
                      ____________________________________________________________
consensus             TTGCGGCTAAGCGCTGTGGTTTTGTTCAGTTTTCTAACAGGCCTTCTGCTGAGCATGCTT
 
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rJMSF015A07+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGGA
rJMSF052F10+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
rJMFF025F08+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
rJMFF016C24+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
JMFN039M24-           TATCAAGCCTTCAGGGCAGAC-CTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
rJMFF022F11+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
rJMFF016N14+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAC
rJMFF020P12+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
rJMFF041O11+          TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
                      ____________________________________________________________
consensus             TATCAAGCCTTCAGGGCGCACAGTTAGGAGAACAGAACGTCCGGCTTTCGTGGGGACGAA
 
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rJMSF015A07+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMSF052F10+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMFF025F08+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMFF016C24+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
JMFN039M24-           ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMFF022F11+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMFF016N14+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMFF020P12+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
rJMFF041O11+          ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
                      ____________________________________________________________
consensus             ACCCCTCTAACAAACAGTCGGACCAGACCCAGTGGGGTGGTGGTGTTGGTGGTTCTTATT
 
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rJMSF015A07+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMSF052F10+          ATGGGTANGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMFF025F08+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMFF016C24+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
JMFN039M24-           ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMFF022F11+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMFF016N14+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMFF020P12+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
rJMFF041O11+          ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
                      ____________________________________________________________
consensus             ATGGGTATGCACAACAAGGGTACGATGCATATGGATACGCTCCGCCTCCACAAGACCCTA
 
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rJMSF015A07+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMSF052F10+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMFF025F08+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMFF016C24+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
JMFN039M24-           ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMFF044C11+                                 GGATATACAAATTTCCAACAGCCCCAACAGTGATCAC
rJMFF022F11+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMFF016N14+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMFF020P12+          GTATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
rJMFF041O11+          ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
                      ____________________________________________________________
consensus             ATATGTACTATGGAAGTTACCCAGGATATACAAATTACCAACAGCCACAACAGTGATCAC
 
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rJMSF015A07+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMSF052F10+          TCTAGGGCTGGAGATTGGTCTACCATGGCAANCTAGGTCCAATGTTTTCGATTATCAATG
rJMFF025F08+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMFF016C24+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
JMFN039M24-           TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMFF044C11+          TTTAGGGCTGGAGATTGGTTTTCCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMFF022F11+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMFF016N14+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMFF020P12+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
rJMFF041O11+          TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
                      ____________________________________________________________
consensus             TCTAGGGCTGGAGATTGGTCTACCATGGCAA-CTAGGTCCAATGTTTTCGATTATCAATG
 
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rJMSF015A07+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
rJMSF052F10+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
rJMFF025F08+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
rJMFF016C24+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
JMFN039M24-           TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGTACCCTGACTTCTAAGTTT
rJMFF044C11+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTTTAAGTTT
rJMFF022F11+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
rJMFF016N14+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
rJMFF020P12+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTTACTTCTAAGTTT
rJMFF041O11+          TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
                      ____________________________________________________________
consensus             TAATGTGATTGGTTATATGACAATGATGATGCTTGGCATGGCACCCTGACTTCTAAGTTT
 
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rJMSF015A07+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
rJMSF052F10+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTATCTAGGAGAGGACA
rJMFF025F08+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
rJMFF016C24+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
JMFN039M24-           ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
rJMFF044C11+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACC
rJMFF022F11+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
rJMFF016N14+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
rJMFF020P12+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
rJMFF041O11+          ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CCAGGAGAGGACA
                      ____________________________________________________________
consensus             ATTATTATGATTTTTATTTAATTGGAAATTTGAGTATCCTAAAGTA-CTAGGAGAGGACA
 
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rJMSF015A07+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAA                        
rJMSF052F10+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
rJMFF025F08+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGT 
rJMFF016C24+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
JMFN039M24-           CGGTTCGTGTGGATGTGAGAGTAATCCTTGCTCAAACAACGTGTAGTCCATTTTGCTGTT
rJMFF044C11+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
rJMFF022F11+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
rJMFF016N14+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
rJMFF020P12+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
rJMFF041O11+          CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
                      ____________________________________________________________
consensus             CGGTTCGTGTGGATGTGAGAGTAATCCTTGTTCAAACAACGTGTAGTCCATTTTGCTGTT
 
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rJMSF052F10+          GAAATCTGT                                                   
rJMFF016C24+          GAAATCTGTCTAGTGTTCCTTTGATACTTTG                             
JMFN039M24-           GAAATCTGTCTAGTGTTCCTTTGATACTTTGTTGTTTATTC                   
rJMFF044C11+          GAAATCTGTTTAGTGTTCCTTTGATACTTTGTTGTTT                       
rJMFF022F11+          GAAATCTGTCTAGTGTTCCTTTGATACTTTGTTGTTTATTC                   
rJMFF016N14+          GAAATCTGTCTAGTGTTCCTTTGATACTTTGTTGTTTATTCCAGACCATGTTATTACTC 
rJMFF020P12+          GAAATCTGTCTAGTGTTCCTTTGATACTTTGTTGTTTATTCCAGACCATGTTATTACTC 
rJMFF041O11+          GAAATCTGTCTAGTGTTCCTTTGATACTTTGTTGTTTATTCCAGACCATGTTATTACTCC
                      ____________________________________________________________
consensus             GAAATCTGTCTAGTGTTCCTTTGATACTTTGTTGTTTATTCCAGACCATGTTATTACTCC