Contig 002660:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041F18Sequence654013181 (4)ref|XP_002277256.1|3e-89PREDICTED: protein kinase 2B, chloroplastic isoform X1 [Vitis vinifera] emb|CBI602002660 (2)ref|XP_009762807.1|1e-23PREDICTED: protein kinase 2B, chloroplastic-like [Nicotiana sylvestris]
JMSF009G16Sequence400007770 (81)gb|AFU50381.1|2e-61chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 764002660 (2)ref|XP_009590721.1|5e-70PREDICTED: protein kinase 2B, chloroplastic-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF009G16+                                            TACGCAAGTAGTGGGCACGCACGGNT
                      ____________________________________________________________
consensus                                               TACGCAAGTAGTGGGCACGCACGGNT
 
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rJMSF009G16+          ACGCAGCGCCCGAATACGTCGNTACGGGCCGGTTGACTGCGAAGAGCGACGTTTACAGCT
                      ____________________________________________________________
consensus             ACGCAGCGCCCGAATACGTCGNTACGGGCCGGTTGACTGCGAAGAGCGACGTTTACAGCT
 
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rJMSF009G16+          TCGGGGTCGTGCTGCTCGAGCTACTATCCGGGCGTCGTGCCGTTGACAAAACGAAGCTCG
                      ____________________________________________________________
consensus             TCGGGGTCGTGCTGCTCGAGCTACTATCCGGGCGTCGTGCCGTTGACAAAACGAAGCTCG
 
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rJMSF009G16+          GTGTGGAGCAGCATCTCGTGGATTGGGCAAAACCGTATTTGGGCGACAAGCGGAGGCTAT
rJMFF041F18+                                                                    AT
                      ____________________________________________________________
consensus             GTGTGGAGCAGCATCTCGTGGATTGGGCAAAACCGTATTTGGGCGACAAGCGGAGGCTAT
 
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rJMSF009G16+          TCCGGATTATGGACACGAAACTCGAGGGCCAGTACCCTCAGAAAGGCGCACTCAAAGCCG
rJMFF041F18+          TCCGGATTATGGACACGAAACTCGAGGGCCAGTACCCTCAGAAAGGCGCACTCAAAGCCG
                      ____________________________________________________________
consensus             TCCGGATTATGGACACGAAACTCGAGGGCCAGTACCCTCAGAAAGGCGCACTCAAAGCCG
 
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rJMSF009G16+          CAAACCTCGCCCTGCAATGTCTGAGCACCGAGCACAAACTCAGGCCCCGCATGTCCGAAG
rJMFF041F18+          CAAACCTCGCCCTGCAATGTCTGAGCACCGAGCACAAACTCAGGCCCCGCATGTCCGAAG
                      ____________________________________________________________
consensus             CAAACCTCGCCCTGCAATGTCTGAGCACCGAGCACAAACTCAGGCCCCGCATGTCCGAAG
 
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rJMSF009G16+          TTCTGGCCGAGCTCGAGCAACTCCAAGCGCCAAAGGGCTCGTCCAAACTCCAGCAGCCCG
rJMFF041F18+          TTCTGGCCGAGCTCGAGCAACTCCAAGCGCCAAAGGGCTCGTCCAAACTCCAGCAGCCCG
                      ____________________________________________________________
consensus             TTCTGGCCGAGCTCGAGCAACTCCAAGCGCCAAAGGGCTCGTCCAAACTCCAGCAGCCCG
 
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rJMSF009G16+          AGCATCAAGGCGCTCCTCCCGCCCGCGTTAGAACGGCAGCAGCAGCGGTGAAGCATCACC
rJMFF041F18+          AGCATCAAGGCGCTCCTCCCGCCCGCGTTAGAACGGCAGCAGCAGCGGTGAAGCATCACC
                      ____________________________________________________________
consensus             AGCATCAAGGCGCTCCTCCCGCCCGCGTTAGAACGGCAGCAGCAGCGGTGAAGCATCACC
 
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rJMSF009G16+          ACTCCCCTCGGAACACGACGCCCCCCCACCCGTCTCCTCTGCCTTCCCACAAGAAGTCGC
rJMFF041F18+          ACTCCCCTCGGAACACGACGCCCCCCCACCCGTCTCCTCTGCCTTCCCACAAGAAGTCGC
                      ____________________________________________________________
consensus             ACTCCCCTCGGAACACGACGCCCCCCCACCCGTCTCCTCTGCCTTCCCACAAGAAGTCGC
 
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rJMSF009G16+          CACAAGTAAGATAAGCGCTATCCCGCCCCACTATAGGACAGTTTAGGGCGGGCCTGCGGG
rJMFF041F18+          CACAAGTAAGATAAGCGCTATCCCGCCCCACTATAGGACAGTTTAGGGCGGGCCTGCGGG
                      ____________________________________________________________
consensus             CACAAGTAAGATAAGCGCTATCCCGCCCCACTATAGGACAGTTTAGGGCGGGCCTGCGGG
 
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rJMSF009G16+          TTTTAGTTCACCTTAGACAAGGCAGAGTGAGTTCCTTTTCCCTAACATTTCCATGGAAAT
rJMFF041F18+          TTTTAGTTCACCTTAGACAAGGCAGAGTGAGTTCCTTTTCCCTAACATTTCCATGGAAAT
                      ____________________________________________________________
consensus             TTTTAGTTCACCTTAGACAAGGCAGAGTGAGTTCCTTTTCCCTAACATTTCCATGGAAAT
 
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rJMSF009G16+          TTTGAAGTACTACTTAGAGCCTAGACAAGTTCATTGAAACATTGGATTGGACAAGGTTGT
rJMFF041F18+          TTTGAAGTACTACTTAGAGCCTAGACAAGTTCATTGAAACATTGGATTGGACAAGGTTGT
                      ____________________________________________________________
consensus             TTTGAAGTACTACTTAGAGCCTAGACAAGTTCATTGAAACATTGGATTGGACAAGGTTGT
 
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rJMSF009G16+          ACTTGGATGTCTGGATGGTAGTTGGGCTTAGAGAATCTGCATTCTGTTTTTGCTTTGATC
rJMFF041F18+          ACTTGGATGTCTGGATGGTAGTTGGGCTTAGAGAATCTGCATTCTGTTTTTGCTTTGATC
                      ____________________________________________________________
consensus             ACTTGGATGTCTGGATGGTAGTTGGGCTTAGAGAATCTGCATTCTGTTTTTGCTTTGATC
 
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rJMSF009G16+          CACAGAAACTAGAGCCCA                                          
rJMFF041F18+          CACAGAAACTAGAGCCCAACTTGTATTGTGTGTGTGTATATATATATTCTCATAGTTCCT
                      ____________________________________________________________
consensus             CACAGAAACTAGAGCCCAACTTGTATTGTGTGTGTGTATATATATATTCTCATAGTTCCT