Contig 002659:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040P07Sequence636002659 (3)ref|XP_009774156.1|3e-35PREDICTED: putative mediator of RNA polymerase II transcription subunit 8 [Nico
JMFF043I09Sequence644006065 (3)ref|XP_010269543.1|2e-57PREDICTED: leucine-rich repeat extensin-like protein 5 [Nelumbo nucifera]483002659 (3)ref|XP_009774156.1|2e-31PREDICTED: putative mediator of RNA polymerase II transcription subunit 8 [Nico
JMFF047A11Sequence164006065 (3)357002659 (3)emb|CDP00673.1|1e-20unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF040P07+                                  ACGTACAACTTGCCCGTGCAACAAACTAGTGAGCCT
                      ____________________________________________________________
consensus                                     ACGTACAACTTGCCCGTGCAACAAACTAGTGAGCCT
 
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rJMFF040P07+          TCTTCCACAGCTTCTACCCGTCCTCAAACACCTCCTGCAACTACAGTTGTCCCTCCTACT
                      ____________________________________________________________
consensus             TCTTCCACAGCTTCTACCCGTCCTCAAACACCTCCTGCAACTACAGTTGTCCCTCCTACT
 
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rJMFF043I09+                        TCCTAGAAACGGTCCTGCCTCTAAACCTGAAATGAATGCTGGCTCA
rJMFF040P07+          TCTGACTATAATCCTCCTAGAAACGGTCCTGCCTCTAAACCTGAAATGAATGCTGGCTCA
                      ____________________________________________________________
consensus             TCTGACTATAATCCTCCTAGAAACGGTCCTGCCTCTAAACCTGAAATGAATGCTGGCTCA
 
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rJMFF043I09+          TATAGAACTGCAGTTGCTCCACAATTGGTTCAGGTTGCTCCTGGCCAGCATCTCCCACAG
rJMFF040P07+          TATAGAACTGCAGTTGCTCCACAATTGGTTCAGGTTGCTCCTGGCCAGCATCTCCCACAG
                      ____________________________________________________________
consensus             TATAGAACTGCAGTTGCTCCACAATTGGTTCAGGTTGCTCCTGGCCAGCATCTCCCACAG
 
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rJMFF043I09+          TATGCTGGCTTCACTCAGATCCATCACCCATTTCAGTTTACTGTACCTACATCCGCTGCT
rJMFF047A11+                   TTCACTCAGATCCATCACCCATCTCAGTCTACTGTACCTACATCCGCTGCT
rJMFF040P07+          TATGCTGGCTTCACTCAGATCCATCACCCATCTCAGTCTACTGTACCTACATCCGCTGCT
                      ____________________________________________________________
consensus             TATGCTGGCTTCACTCAGATCCATCACCCATCTCAGTCTACTGTACCTACATCCGCTGCT
 
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rJMFF043I09+          ACTGGAAATTATGCTTATGCTTTTACTGATCCCTCACATGCACAGATATACTATACTCAG
rJMFF047A11+          ACTGGAAATTATGCTTATGCTTTTACTGATCCCTCACATGCACAGATATACTATACTCAG
rJMFF040P07+          ACTGGAAATTATGCTTATGCTTTTACTGATCCCTCACATGCACAGATATACTATACTCAG
                      ____________________________________________________________
consensus             ACTGGAAATTATGCTTATGCTTTTACTGATCCCTCACATGCACAGATATACTATACTCAG
 
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rJMFF043I09+          CCTTTTGCACCCCAGTTGTCAGCTCAATACCAAACTATGAAATCCGTCCATGGTATACCT
rJMFF047A11+          CCTTTTGCACCCCAGTTGTCAGCTCAATACCAAACTATGAAATCCGTCCATGGTATACCT
rJMFF040P07+          CCTTTTGCACCCCAGTTGTCAGCTCAATACCAAACTATGAAATCCGTCCATGGTATACCT
                      ____________________________________________________________
consensus             CCTTTTGCACCCCAGTTGTCAGCTCAATACCAAACTATGAAATCCGTCCATGGTATACCT
 
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rJMFF043I09+          GAAGCTTTTTCGCAGCTTCCTACAGAAAACCTCAATCAGCATGCTTGAATTGCGATGAAA
rJMFF047A11+          GAAGCTTTTTCGCAGCTTCCTACAGAAAACCTCAATCAGCATGCTTGAATTGCGATGAAA
rJMFF040P07+          GAAGCTTCTTCGCAGCTTCCTACAGAAAACCTCAATCAGCATGCTTGAATTGCGATGAAA
                      ____________________________________________________________
consensus             GAAGCTTTTTCGCAGCTTCCTACAGAAAACCTCAATCAGCATGCTTGAATTGCGATGAAA
 
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rJMFF043I09+          GGTGACTTGCAGCATGAAGAAACAGTTTTGCAGCCATGGGTTTGTTTACATTTGAATTTA
rJMFF047A11+          GGTGACTTGCAGCATGAAGAAACAGTTTTGCAGCCATGGGTTTGTTTACATTTGAATTTA
rJMFF040P07+          GGTGACTTGCAGCATGAAGAAACAGTTTTGCAGCCATGGGTTTGTTTACATTTGAATTTA
                      ____________________________________________________________
consensus             GGTGACTTGCAGCATGAAGAAACAGTTTTGCAGCCATGGGTTTGTTTACATTTGAATTTA
 
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rJMFF043I09+          TTGTGTTAAACGTTTGCTCTATTGTTGCTATTGGAATGTGATATGTATTTGTTAAAGGTT
rJMFF047A11+          TTGTGTTAAACGTTTGCTCTATTGTTGCTATTGGAATGTGATATGTATTTGTTAAAGGTT
rJMFF040P07+          TTGTGTTAAACGTTTGCTCTATTGTTGCTATTGGAATGTGATATGTATTTGTTAAAGGTT
                      ____________________________________________________________
consensus             TTGTGTTAAACGTTTGCTCTATTGTTGCTATTGGAATGTGATATGTATTTGTTAAAGGTT
 
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rJMFF043I09+          A                                                           
rJMFF047A11+          A                                                           
rJMFF040P07+          ATAATTAACTTTGGTATTCTTTATTTTCTTGTATGTAATGTTATTATTTACTGTGAAACT
                      ____________________________________________________________
consensus             ATAATTAACTTTGGTATTCTTTATTTTCTTGTATGTAATGTTATTATTTACTGTGAAACT