Contig 002656:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040L21Sequence358008849 (7)239002656 (3)
JMSF001J18Sequence367008849 (7)130002656 (3)
JMSF047H13Sequence441008849 (7)223002656 (3)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H13+                              TTTTTTTTTTTTTTTTTNTTCTTCAGTGAGAGTCAAGGTA
rJMSF001J18+                              TTTTTTTTTTTTTTTTTNCTCTTCAGTGAGAGTCAAGGTA
rJMFF040L21+           ANNNAAAATTNNAAANCTTTTTTTTTTTTTTTTTTTTTTCTTCAGTGAGAGTCAAGGTA
                      ____________________________________________________________
consensus              ANNNAAAATTNNAAANCTTTTTTTTTTTTTTTTTTTTTTCTTCAGTGAGAGTCAAGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H13+          TGTAAGGGTCACACTGCAANGGAATTTTTGACATGTGCAGTGGGTGAGTCAGGAAAAGAA
rJMSF001J18+          TGTAAGGGTCACACTGCAATGGAANTTTTGACATGTGCAGTGGGTGAGTCAGGAAAAGAA
rJMFF040L21+          TGTAAGGGTCACACTGCAATGGAATTTTTGACATGTGCAGTGGGTGAGTCAGGAAAAGAA
                      ____________________________________________________________
consensus             TGTAAGGGTCACACTGCAATGGAATTTTTGACATGTGCAGTGGGTGAGTCAGGAAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H13+          TAGTAGTCTTTTATTAATGTCTTATGTTAATATTTNAATGTAACTTTGTAAGGTGTCTGT
rJMSF001J18+          TAGTAGTCT                                                   
rJMFF040L21+          TAGTAGTCTTTTATTAATGTCTTATGTTAATATTTTAATGTAACTTTGTAAGGTGTCTGT
                      ____________________________________________________________
consensus             TAGTAGTCTTTTATTAATGTCTTATGTTAATATTTTAATGTAACTTTGTAAGGTGTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047H13+          CTCCTNGGTCAGGCTGTNGTTTNNGNTATNCCATGANCAAGGAGA               
rJMFF040L21+          CTCCTTGGTCAGGCTGTTGTTTTTGTTATGCCATGATCAAGGAGACTTTGTAATGTGTCT
                      ____________________________________________________________
consensus             CTCCTTGGTCAGGCTGTTGTTTTTGTTATGCCATGATCAAGGAGACTTTGTAATGTGTCT