Contig 002652:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039I23Sequence603000223 (3)ref|XP_009789141.1|7e-76PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]755002652 (4)ref|XP_009789141.1|2e-107PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]
JMSF007H07Sequence404000223 (3)ref|XP_009612581.1|7e-29PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana tomentosiformis]771002652 (4)ref|XP_009789141.1|7e-147PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]
JMSF033E12Sequence653000223 (3)ref|XP_009789141.1|8e-90PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]787002652 (4)ref|XP_009789141.1|1e-147PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]
JMSF049O22Sequence672022265ref|XP_009789141.1|6e-93PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]719002652 (4)ref|XP_009789141.1|3e-131PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007H07+ ACT
rJMSF033E12+ GTGGAGGGAAAACT
                      ____________________________________________________________
consensus GTGGAGGGAAAACT
 
. : . : . : . : . : . :
rJMSF007H07+ GGAATTAACCACCCGCTTGGTAAGAATATGATCGGTGCCTTCTACCAACCTCAATGTGTG
rJMSF049O22+ TGTGTG
rJMSF033E12+ GGAATTAACCACCCGCCTGGTAAGAATATGATCGGTGCCTTCTACCAACCTCAATGTGTG
rJMFF039I23+ AATATGATCGGTGCCTTCTACCAACCTCANTGTGTG
                      ____________________________________________________________
consensus GGAATTAACCACCCGCTTGGTAAGAATATGATCGGTGCCTTCTACCAACCTCAATGTGTG
 
. : . : . : . : . : . :
rJMSF007H07+ CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
rJMSF049O22+ CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
rJMSF033E12+ CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
rJMFF039I23+ CTNGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTGCC
                      ____________________________________________________________
consensus CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
 
. : . : . : . : . : . :
rJMSF007H07+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
rJMSF049O22+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
rJMSF033E12+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
rJMFF039I23+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
                      ____________________________________________________________
consensus TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
 
. : . : . : . : . : . :
rJMSF007H07+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
rJMSF049O22+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
rJMSF033E12+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
rJMFF039I23+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
                      ____________________________________________________________
consensus TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
 
. : . : . : . : . : . :
rJMSF007H07+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
rJMSF049O22+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
rJMSF033E12+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
rJMFF039I23+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
                      ____________________________________________________________
consensus TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
 
. : . : . : . : . : . :
rJMSF007H07+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
rJMSF049O22+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
rJMSF033E12+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
rJMFF039I23+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
                      ____________________________________________________________
consensus GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
 
. : . : . : . : . : . :
rJMSF007H07+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
rJMSF049O22+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
rJMSF033E12+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
rJMFF039I23+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
                      ____________________________________________________________
consensus GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
 
. : . : . : . : . : . :
rJMSF007H07+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
rJMSF049O22+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
rJMSF033E12+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
rJMFF039I23+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
                      ____________________________________________________________
consensus ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
 
. : . : . : . : . : . :
rJMSF007H07+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
rJMSF049O22+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
rJMSF033E12+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
rJMFF039I23+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
                      ____________________________________________________________
consensus ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
 
. : . : . : . : . : . :
rJMSF007H07+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
rJMSF049O22+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
rJMSF033E12+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
rJMFF039I23+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
                      ____________________________________________________________
consensus TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
 
. : . : . : . : . : . :
rJMSF007H07+ TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
rJMSF049O22+ TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
rJMSF033E12+ TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
rJMFF039I23+ TGTATTCACAGGTGACTACGAC-AAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
                      ____________________________________________________________
consensus TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
 
. : . : . : . : . : . :
rJMSF007H07+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
rJMSF049O22+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
rJMSF033E12+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
rJMFF039I23+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
                      ____________________________________________________________
consensus ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
 
. : . : . : . : . : . :
rJMSF007H07+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATAC
rJMSF049O22+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATAC
rJMSF033E12+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATAC
rJMFF039I23+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATACAGTTATGTTGACAATTTTGTTC
                      ____________________________________________________________
consensus TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATACAGTTATGTTGACAATTTTGTTC