| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039I23 | Sequence | 603 | 000223 (3) | ref|XP_009789141.1| | 7e-76 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] | 755 | 002652 (4) | ref|XP_009789141.1| | 2e-107 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] |
| JMSF007H07 | Sequence | 404 | 000223 (3) | ref|XP_009612581.1| | 7e-29 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana tomentosiformis] | 771 | 002652 (4) | ref|XP_009789141.1| | 7e-147 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] |
| JMSF033E12 | Sequence | 653 | 000223 (3) | ref|XP_009789141.1| | 8e-90 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] | 787 | 002652 (4) | ref|XP_009789141.1| | 1e-147 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] |
| JMSF049O22 | Sequence | 672 | 022265 | ref|XP_009789141.1| | 6e-93 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] | 719 | 002652 (4) | ref|XP_009789141.1| | 3e-131 | PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF007H07+ ACT
rJMSF033E12+ GTGGAGGGAAAACT
____________________________________________________________
consensus GTGGAGGGAAAACT
. : . : . : . : . : . :
rJMSF007H07+ GGAATTAACCACCCGCTTGGTAAGAATATGATCGGTGCCTTCTACCAACCTCAATGTGTG
rJMSF049O22+ TGTGTG
rJMSF033E12+ GGAATTAACCACCCGCCTGGTAAGAATATGATCGGTGCCTTCTACCAACCTCAATGTGTG
rJMFF039I23+ AATATGATCGGTGCCTTCTACCAACCTCANTGTGTG
____________________________________________________________
consensus GGAATTAACCACCCGCTTGGTAAGAATATGATCGGTGCCTTCTACCAACCTCAATGTGTG
. : . : . : . : . : . :
rJMSF007H07+ CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
rJMSF049O22+ CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
rJMSF033E12+ CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
rJMFF039I23+ CTNGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTGCC
____________________________________________________________
consensus CTTGTAGACACAGACACCCTGAATACACTGCCAGACCGAGAACTAGCATCTGGCCTTG-C
. : . : . : . : . : . :
rJMSF007H07+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
rJMSF049O22+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
rJMSF033E12+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
rJMFF039I23+ TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
____________________________________________________________
consensus TGAAGTTATAAAATATGGACTTATTAGAGATGCGGAGTTTTTCGAGTGGCAAGAGAATAA
. : . : . : . : . : . :
rJMSF007H07+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
rJMSF049O22+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
rJMSF033E12+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
rJMFF039I23+ TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
____________________________________________________________
consensus TATGTCAGCATTGCTAGCAAGGGACCCTGAAGCATTTGCTTACGCCATAAAGCGTTCCTG
. : . : . : . : . : . :
rJMSF007H07+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
rJMSF049O22+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
rJMSF033E12+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
rJMFF039I23+ TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
____________________________________________________________
consensus TGAAAACAAGGCAGAGGTTGTGTCCTTGGATGAGAAAGAGAGTGGATTGAGGGCCACTTT
. : . : . : . : . : . :
rJMSF007H07+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
rJMSF049O22+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
rJMSF033E12+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
rJMFF039I23+ GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
____________________________________________________________
consensus GAACTTGGGTCACACCTTTGGCCATGCAATAGAGACTGGTTTTGGCTATGGAGAGTGGCT
. : . : . : . : . : . :
rJMSF007H07+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
rJMSF049O22+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
rJMSF033E12+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
rJMFF039I23+ GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
____________________________________________________________
consensus GCATGGAGAAGCCGTTGCGGCTGGAACGGTTATGGCTGTTGATATGTCACGCCGCCTTGG
. : . : . : . : . : . :
rJMSF007H07+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
rJMSF049O22+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
rJMSF033E12+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
rJMFF039I23+ ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
____________________________________________________________
consensus ATGGATTGATGATTCACTGGTACAGAGGGTGGATAAGATCCTTCAACAGACAAAGCTGCT
. : . : . : . : . : . :
rJMSF007H07+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
rJMSF049O22+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
rJMSF033E12+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
rJMFF039I23+ ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
____________________________________________________________
consensus ACCGACTGCGCCTCCAGAGACCATGACCGTCGAGATGTTCAAGTCCATCATGGCGGTTGA
. : . : . : . : . : . :
rJMSF007H07+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
rJMSF049O22+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
rJMSF033E12+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
rJMFF039I23+ TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
____________________________________________________________
consensus TAAGAAAGTGGCTGATGGGAAGCTCAGACTCATCCTTTTGAAAGGTCCTCTGGGCAATTG
. : . : . : . : . : . :
rJMSF007H07+ TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
rJMSF049O22+ TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
rJMSF033E12+ TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
rJMFF039I23+ TGTATTCACAGGTGACTACGAC-AAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
____________________________________________________________
consensus TGTATTCACAGGTGACTACGACAAAAAAGCATTAGACCAAACACTCCATGCCTTTTGTAA
. : . : . : . : . : . :
rJMSF007H07+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
rJMSF049O22+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
rJMSF033E12+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
rJMFF039I23+ ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
____________________________________________________________
consensus ATCTTAATCAAATTGCGACATTTTTTTGGTTGTAGCAGCAGGTATCAAGTTAATTACTCT
. : . : . : . : . : . :
rJMSF007H07+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATAC
rJMSF049O22+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATAC
rJMSF033E12+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATAC
rJMFF039I23+ TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATACAGTTATGTTGACAATTTTGTTC
____________________________________________________________
consensus TTGTTTTTGCATGATGTTTTTGTCTTGTATATTAATACAGTTATGTTGACAATTTTGTTC