Contig 002651:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-                    AACTCTTCTTTTCATGCAATTAATTTCTTAATTTCTCCGCCTCTCCAGATC
JMFF026I20-                    AACTCTTCTTTTCATGCAATTAATTTCTTAATTTCTCCGCCTCTCCAGATC
rJMFF026I20+                                                   TTCTCCGCCTCTCCAGATN
                      ____________________________________________________________
consensus                      AACTCTTCTTTTCATGCAATTAATTTCTTAATTTCTCCGCCTCTCCAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           TGCTTTCTTCCCTCAAGATTTGAGCTTTCTTTACCCTCTGGTCTTTCTTCTCTCTAGCTC
JMFF026I20-           TGCTTTCTTCCCTCAAGATTTGAGCTTTCTTTACCCTCTGGTCTTTCTTCTCTCTAGCTC
rJMFF026I20+          TGCTTTCTTCCCTCAAGATNTGAGCTNTCTTTACCCTCTGGTCTTTCTTCTCTCTAGCTC
rJMFF039C15+                                                          TCTCTCTAGCTC
                      ____________________________________________________________
consensus             TGCTTTCTTCCCTCAAGATTTGAGCTTTCTTTACCCTCTGGTCTTTCTTCTCTCTAGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           CCTTATCTCTTTCAGATCTACCAGTCGAAGGAGAAGACGACAGC-GGTGGCGACGGCGCG
JMFF026I20-           CCTTATCTCTTTCAGATCTACCAGTCGAAGGAGAAGACGACAGC-GGTGGCGACGGCGCG
rJMFF026I20+          CCTTATCTCTTTCAGATCTACCAGTCGAAGGAGAAGACGACAGC-GGTGGCGACGGCGCG
rJMFF039C15+          CCTTATCTCTTTCAGATCTACCAGTCGAAGGAGAAGACGACAGCGGGTGGCGACGGCGCG
                      ____________________________________________________________
consensus             CCTTATCTCTTTCAGATCTACCAGTCGAAGGAGAAGACGACAGC-GGTGGCGACGGCGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           GAAGACGACAGCGTCATGTGTGTGCGAAGCCGGCGCCGACTCCCAGCCAGCCGATATTCC
JMFF026I20-           GAAGACGACAGCGTCATGTGTGTGCGAAGCCGGCGCCGACTCCCAGCCAGCCGATATTCC
rJMFF026I20+          GAAGACGACAGCGTCATGTGTGTGCGAAGCCGGCGCCGACTCCCAGCCAGCCGATATTCC
rJMFF039C15+          GAAGACGACAGCGTCATGTGTGTGCGAAGCCGGCGCCGACTCCCAGCCAGCCGATATTCC
                      ____________________________________________________________
consensus             GAAGACGACAGCGTCATGTGTGTGCGAAGCCGGCGCCGACTCCCAGCCAGCCGATATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           CATCTGCGATCGATTAGTTCGCCGTTCTTCTGGAGCCAGCTCAGGGACGACGAAGCTGCT
JMFF026I20-           CATCTGCGATCGATTAGTTCGCCGTTCTTCTGGAGCCAGCTCAGGGACGACGAAGCTGCT
rJMFF026I20+          CATCTGCGATCGATTAGTTCGCCGTTCTTTTGGAGCCAGCTCAGGGACGACGAAGNTGNT
rJMFF039C15+          CATCTGCGATCGATTAGTTCGCCGTTCTTNTGGAGCCAGCTCAGGGACGACGAAGCTGCT
                      ____________________________________________________________
consensus             CATCTGCGATCGATTAGTTCGCCGTTCTTCTGGAGCCAGCTCAGGGACGACGAAGCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           ACGTTTCCGGAATCCACCAATCTGTTGATTGTAGATTTCCAGTGAGCCCAGTCGTTATCG
JMFF026I20-           ACGTTTCCGGAATCCACCAATCTGTTGATTGTAGATTTCCAGTGAGCCCAGTCGTTATCG
rJMFF026I20+          ACGTTTCCGGAATCCACCAATCTGTTGATTGTAGATTTCCAGTGAGCCCAGTCGTTATCG
rJMFF039C15+          ACGTTTCCGGAATCCACCAATCTGTTGATTGTAGATTTCCAGTGAGCCCAGTCGTTATCG
                      ____________________________________________________________
consensus             ACGTTTCCGGAATCCACCAATCTGTTGATTGTAGATTTCCAGTGAGCCCAGTCGTTATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           TCGACACGCGATCTTCGCCGTCGCCGGAATCCGGTTGTGGGCGCTAGCTGCCGTTTTTGA
JMFF026I20-           TCGACACGCGATCTTCGCCGTCGCCGGAATCCGGTTGTGGGCGCTAGCTGCCGTTTTTGA
rJMFF026I20+          TNGACACGCGATCTTNGCCGTCGCCGGAATCCGGTTGTGGGCGNTAGCTGCCGTTTTTGA
rJMFF039C15+          TNGACACGCGATCTTNGCCGTCGCCGGAATCCGGTTGTGGGCGCTAGCTGCCGTTTTTGA
                      ____________________________________________________________
consensus             TCGACACGCGATCTTCGCCGTCGCCGGAATCCGGTTGTGGGCGCTAGCTGCCGTTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039C15-           CGAAGATGCCATACGTCTGGTTTTCCCTCCTCCAG                         
JMFF026I20-           CGAAGATGCCATACGTCTGGTTTTCCCTCCTCCAGTAGCCCACCGGACGACGTTGGGCAC
rJMFF026I20+          CGAAGATGCCATACGTCTGGTTTTCCCTCCTCCAGTAGCCCACCGGACGACGTTGGGCAC
rJMFF039C15+          CGAAGATGCCATACGTCTGGTTTTCCCTCCTCCAGTAGCCCACCGGACGACGTTGGGCAC
                      ____________________________________________________________
consensus             CGAAGATGCCATACGTCTGGTTTTCCCTCCTCCAGTAGCCCACCGGACGACGTTGGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026I20-           TTGGTATTTGAACCATCTTAGCCAGGGTATGACAGATCCCTCAGGACAGCAGATTCAAGA
rJMFF026I20+          TTGGTATTTGAACCATCTTAGCCAGGGTATGACAGATCCCTCAGGACAGCAGATTCAAGA
rJMFF039C15+          TTGGTATTTGAACCATCTTAGCCAGGGTATGACAGATCCCTCAGGACAGCAGATTCAAGA
                      ____________________________________________________________
consensus             TTGGTATTTGAACCATCTTAGCCAGGGTATGACAGATCCCTCAGGACAGCAGATTCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026I20-           TCTTTCGACAGTAATACGATTGGCAGATGTCAATACAAGTAATATATGTTCACTCCTTGT
rJMFF026I20+          TCTTTCGACAGTAATACGATTGGCAGATGTCAATACAAGTAATATATGTTCACTCCTTGT
rJMFF039C15+          TCTTTCGACAGTAATACGATTGGCAGATGTCAATACAAGTAATATATGTTCACTCCTTGT
                      ____________________________________________________________
consensus             TCTTTCGACAGTAATACGATTGGCAGATGTCAATACAAGTAATATATGTTCACTCCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026I20-           AAAAACTAAA                                                  
rJMFF026I20+          AAAAACTAAAAAAAAGTTGTTGTAAACACCAGATCNTAACACCTACATATATTTAAAAAA
rJMFF039C15+          AAAAACTAAAAAAAAGTTGTTGTAAACACCAGATCCTAACACCTACATATATTTAAAAAA
                      ____________________________________________________________
consensus             AAAAACTAAAAAAAAGTTGTTGTAAACACCAGATCCTAACACCTACATATATTTAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026I20+          GATGCAATAGGATTCAATTGTGATTTGAAATTCATAGGACCGGCCCGGTTACTCCTCACC
rJMFF039C15+          GATGCAATAGGATTCAATTGTGATTTGAAATTCATAGGACCGGCCCGGTTACTCCTCACC
                      ____________________________________________________________
consensus             GATGCAATAGGATTCAATTGTGATTTGAAATTCATAGGACCGGCCCGGTTACTCCTCACC