Contig 002649:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A22Sequence558008701 (4)ref|NP_001053457.2|1e-54Os04g0543900 [Oryza sativa Japonica Group] dbj|BAF15371.2| Os04g0543900 [Oryza s734002649 (5)gb|KJB19598.1|2e-112hypothetical protein B456_003G110800 [Gossypium raimondii]
JMFF034G14Sequence594008701 (4)emb|CDX87065.1|3e-80BnaC09g03800D [Brassica napus]769002649 (5)gb|KJB19598.1|2e-126hypothetical protein B456_003G110800 [Gossypium raimondii]
JMFF039A08Sequence572008701 (4)emb|CDX87065.1|9e-104BnaC09g03800D [Brassica napus]744002649 (5)gb|KJB19598.1|8e-101hypothetical protein B456_003G110800 [Gossypium raimondii]
JMSF033L01Sequence642008701 (4)ref|XP_004235200.1|4e-122PREDICTED: glutamate dehydrogenase A [Solanum lycopersicum]717002649 (5)gb|KJB19598.1|1e-117hypothetical protein B456_003G110800 [Gossypium raimondii]
JMSF044I20Sequence607006693 (6)ref|XP_009621605.1|3e-87PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [Nicotiana tomento746002649 (5)gb|KJB19598.1|2e-122hypothetical protein B456_003G110800 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF044I20+                             AAACGTGGGATCTTGGGCTGCAAAGCTTATTCACGAGAGAG
rJMSF033L01+                                               TGCAAAGCTTATTCACGAGAGAG
rJMFF001A22+                                                              CGAGAGAG
rJMFF034G14+               ATTCAGGGATTTGGAAACGTGGGATCTTGGGCTGCAAAGCTTATTCACGAGAGAG
rJMFF039A08+                                               TGCAAAGCTTATTCACGAGAGAG
                      ____________________________________________________________
consensus                  ATTCAGGGATTTGGAAACGTGGGATCTTGGGCTGCAAAGCTTATTCACGAGAGAG
 
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rJMSF044I20+          GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMSF033L01+          GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMFF001A22+          GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMFF034G14+          GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMFF039A08+          GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAACGGGGATT
                      ____________________________________________________________
consensus             GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
 
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rJMSF044I20+          GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMSF033L01+          GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMFF001A22+          GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMFF034G14+          GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMFF039A08+          GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
                      ____________________________________________________________
consensus             GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
 
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rJMSF044I20+          GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
rJMSF033L01+          GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
rJMFF001A22+          GGGGATGCCATGGATTCAAACGAGTTGCTGACACGCGAATGTGATGTTCTTATACCGTGT
rJMFF034G14+          GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
rJMFF039A08+          GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
                      ____________________________________________________________
consensus             GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
 
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rJMSF044I20+          GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMSF033L01+          GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMFF001A22+          GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMFF034G14+          GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMFF039A08+          GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
                      ____________________________________________________________
consensus             GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
 
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rJMSF044I20+          GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMSF033L01+          GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMFF001A22+          GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMFF034G14+          GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMFF039A08+          GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
                      ____________________________________________________________
consensus             GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
 
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rJMSF044I20+          GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
rJMSF033L01+          GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
rJMFF001A22+          GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGNGG
rJMFF034G14+          GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
rJMFF039A08+          GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
                      ____________________________________________________________
consensus             GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
 
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rJMSF044I20+          GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMSF033L01+          GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMFF001A22+          GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMFF034G14+          GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMFF039A08+          GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
                      ____________________________________________________________
consensus             GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
 
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rJMSF044I20+          TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMSF033L01+          TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMFF001A22+          TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMFF034G14+          TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMFF039A08+          TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
                      ____________________________________________________________
consensus             TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
 
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rJMSF044I20+          CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMSF033L01+          CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMFF001A22+          CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMFF034G14+          CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMFF039A08+          CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
                      ____________________________________________________________
consensus             CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
 
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rJMSF044I20+          TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMSF033L01+          TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMFF001A22+          TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMFF034G14+          TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMFF039A08+          TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
                      ____________________________________________________________
consensus             TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
 
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rJMSF044I20+          AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMSF033L01+          AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMFF001A22+          AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMFF034G14+          AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMFF039A08+          AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
                      ____________________________________________________________
consensus             AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
 
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rJMSF044I20+          TGATCAATTGGAGTATACTACACAAACAAGACT                           
rJMSF033L01+          TGATCAATTGGAGTATACTACACAAAC                                 
rJMFF001A22+          TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATT               
rJMFF034G14+          TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATT               
rJMFF039A08+          TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATTTCGAATAATTAATAG
                      ____________________________________________________________
consensus             TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATTTCGAATAATTAATAG