clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF001A22 | Sequence | 558 | 008701 (4) | ref|NP_001053457.2| | 1e-54 | Os04g0543900 [Oryza sativa Japonica Group] dbj|BAF15371.2| Os04g0543900 [Oryza s | 734 | 002649 (5) | gb|KJB19598.1| | 2e-112 | hypothetical protein B456_003G110800 [Gossypium raimondii] |
JMFF034G14 | Sequence | 594 | 008701 (4) | emb|CDX87065.1| | 3e-80 | BnaC09g03800D [Brassica napus] | 769 | 002649 (5) | gb|KJB19598.1| | 2e-126 | hypothetical protein B456_003G110800 [Gossypium raimondii] |
JMFF039A08 | Sequence | 572 | 008701 (4) | emb|CDX87065.1| | 9e-104 | BnaC09g03800D [Brassica napus] | 744 | 002649 (5) | gb|KJB19598.1| | 8e-101 | hypothetical protein B456_003G110800 [Gossypium raimondii] |
JMSF033L01 | Sequence | 642 | 008701 (4) | ref|XP_004235200.1| | 4e-122 | PREDICTED: glutamate dehydrogenase A [Solanum lycopersicum] | 717 | 002649 (5) | gb|KJB19598.1| | 1e-117 | hypothetical protein B456_003G110800 [Gossypium raimondii] |
JMSF044I20 | Sequence | 607 | 006693 (6) | ref|XP_009621605.1| | 3e-87 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [Nicotiana tomento | 746 | 002649 (5) | gb|KJB19598.1| | 2e-122 | hypothetical protein B456_003G110800 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
rJMSF044I20+ AAACGTGGGATCTTGGGCTGCAAAGCTTATTCACGAGAGAG
rJMSF033L01+ TGCAAAGCTTATTCACGAGAGAG
rJMFF001A22+ CGAGAGAG
rJMFF034G14+ ATTCAGGGATTTGGAAACGTGGGATCTTGGGCTGCAAAGCTTATTCACGAGAGAG
rJMFF039A08+ TGCAAAGCTTATTCACGAGAGAG
____________________________________________________________
consensus ATTCAGGGATTTGGAAACGTGGGATCTTGGGCTGCAAAGCTTATTCACGAGAGAG
. : . : . : . : . : . :
rJMSF044I20+ GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMSF033L01+ GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMFF001A22+ GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMFF034G14+ GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
rJMFF039A08+ GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAACGGGGATT
____________________________________________________________
consensus GTGGTAAGGTAGTTGCAGTTAGTGACATAACTGGAGCGGTCAGAAATCCAAAC-GGGATT
. : . : . : . : . : . :
rJMSF044I20+ GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMSF033L01+ GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMFF001A22+ GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMFF034G14+ GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
rJMFF039A08+ GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
____________________________________________________________
consensus GATATACCTGCTCTGCTCAAGCATAAAGAGACAACGGGGGTAATAACTAATTTCAGCGGT
. : . : . : . : . : . :
rJMSF044I20+ GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
rJMSF033L01+ GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
rJMFF001A22+ GGGGATGCCATGGATTCAAACGAGTTGCTGACACGCGAATGTGATGTTCTTATACCGTGT
rJMFF034G14+ GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
rJMFF039A08+ GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
____________________________________________________________
consensus GGGGATGCCATGGATTCAAACGAGTTGCTGACACACGAATGTGATGTTCTTATACCGTGT
. : . : . : . : . : . :
rJMSF044I20+ GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMSF033L01+ GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMFF001A22+ GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMFF034G14+ GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
rJMFF039A08+ GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
____________________________________________________________
consensus GCTCTGGGTGGAGTCCTAAACAGAGAAAATGCTGCAGATGTCAAGGCCAAGTACGTTATC
. : . : . : . : . : . :
rJMSF044I20+ GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMSF033L01+ GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMFF001A22+ GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMFF034G14+ GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
rJMFF039A08+ GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
____________________________________________________________
consensus GAAGCTGCTAACCACCCCACTGATCCAGACGCCGATGAGATTTTGTCTAACAAAGGCGTT
. : . : . : . : . : . :
rJMSF044I20+ GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
rJMSF033L01+ GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
rJMFF001A22+ GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGNGG
rJMFF034G14+ GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
rJMFF039A08+ GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
____________________________________________________________
consensus GTAATTCTCCCGGACATATATGCAAACGCTGGAGGTGTGACTGTGAGTTACTTCGAGTGG
. : . : . : . : . : . :
rJMSF044I20+ GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMSF033L01+ GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMFF001A22+ GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMFF034G14+ GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
rJMFF039A08+ GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
____________________________________________________________
consensus GTTCAGAACATTCAAGGGTTTATGTGGGACGAGGAGAAGGTTAACATGGAGCTTAAGAAG
. : . : . : . : . : . :
rJMSF044I20+ TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMSF033L01+ TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMFF001A22+ TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMFF034G14+ TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
rJMFF039A08+ TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
____________________________________________________________
consensus TACATGTCGAAGGCTTTCCTCAACATTAAGAGCATGTGCCAGTCACACAACTGCAATCTA
. : . : . : . : . : . :
rJMSF044I20+ CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMSF033L01+ CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMFF001A22+ CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMFF034G14+ CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
rJMFF039A08+ CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
____________________________________________________________
consensus CGGATGGGGGCGTTCACGCTCGGGGTGAATCGTGTGGCTCGTGCTAGTGTCTTGAGGGGT
. : . : . : . : . : . :
rJMSF044I20+ TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMSF033L01+ TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMFF001A22+ TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMFF034G14+ TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
rJMFF039A08+ TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
____________________________________________________________
consensus TGGGAAGCATAACCCGTTTTCTCGTTTTACTTGACATAGTACCTTATCATATATAGTCGA
. : . : . : . : . : . :
rJMSF044I20+ AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMSF033L01+ AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMFF001A22+ AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMFF034G14+ AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
rJMFF039A08+ AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
____________________________________________________________
consensus AACTGGCTGTGAAAAAGCCGATATCTCTTTTATTTTTCATGAATTGTGATTTGTTTTCAC
. : . : . : . : . : . :
rJMSF044I20+ TGATCAATTGGAGTATACTACACAAACAAGACT
rJMSF033L01+ TGATCAATTGGAGTATACTACACAAAC
rJMFF001A22+ TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATT
rJMFF034G14+ TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATT
rJMFF039A08+ TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATTTCGAATAATTAATAG
____________________________________________________________
consensus TGATCAATTGGAGTATACTACACAAACAAGACTTTCATTTTCATTTCGAATAATTAATAG