Contig 002642:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF036O13-                                        ACATTTCCCCACCCCTCCCAAACCATTCCCC
JMFF026I10-                                        ACATTTCCCCACCCCTCCCAAACCATTCCCC
                      ____________________________________________________________
consensus                                          ACATTTCCCCACCCCTCCCAAACCATTCCCC
 
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JMSF017J23-              GTTCTTCCTCTGATCTCCACTTCTTGATAAGAATCAGATGGCTGAAATTCCATCACC
JMFF036O13-           TTCGTTCTTCCTCTGATCTCCACTTCTTGATAAGAATCAGATGGCTGAAATTCCATCACC
JMFF026I10-           TTCGTTCTTCCTCTGATCTCCACTTCTTGATAAGAATCAGATGGCTGAAATTCCATCACC
                      ____________________________________________________________
consensus             TTCGTTCTTCCTCTGATCTCCACTTCTTGATAAGAATCAGATGGCTGAAATTCCATCACC
 
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JMSF017J23-           TTAAAGAAATACATTTCAAGATTCCTCACATCCGATCTGCAGAATCTCCGGGGAGCTTCA
JMFF036O13-           TTAAAGAAATACATTTCAAGATTCCTCACATCCGATCTGCAGAATCTCCGGGGAGCTTCA
JMFF026I10-           TTAAAGAAATACATTTCAAGATTCCTCACATCCGATCTGCAGAATCTCCGGGGAGCTTCA
                      ____________________________________________________________
consensus             TTAAAGAAATACATTTCAAGATTCCTCACATCCGATCTGCAGAATCTCCGGGGAGCTTCA
 
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JMSF017J23-           AAGATTCTTGAAAATGGCCTTCTATGGCTACCAGGATTCTGTCGGTGAGTACTCCACTAC
JMFF036O13-           AAGATTCTTGAAAATGGCCTTCTATGGCTACCAGGATTCTGTCGGTGAGTACTCCACTAC
JMFF026I10-           AAGATTCTTGAAAATGGCCTTCTATGGCTACCAGGATTCTGTCGGTGAGTACTCCACTAC
                      ____________________________________________________________
consensus             AAGATTCTTGAAAATGGCCTTCTATGGCTACCAGGATTCTGTCGGTGAGTACTCCACTAC
 
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JMSF017J23-           ACCATATCATCACTTTTATGCAACTCACCAACCTTCCTATGAATTCTGCAACCCAAATCT
JMFF036O13-           ACCATATCATCACTTTTATGCAACTCACCAACCTTCCTATGAATTCTGCAACCCAAATCT
JMFF026I10-           ACCATATCATCACTTTTATGCAACTCACCAACCTTCCTATGAATTCTGCAACCCAAATCT
                      ____________________________________________________________
consensus             ACCATATCATCACTTTTATGCAACTCACCAACCTTCCTATGAATTCTGCAACCCAAATCT
 
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JMSF017J23-           GGTTAATAATTGTCCCAATTTCCATGATTATTCTGGCTACTATGCTAAACACCCAGAAGT
JMFF036O13-           GGTTAATAATTGTCCCAATTTCCATGATTATTCTGGCTACTATGCTAAACACCCAGAAGT
JMFF026I10-           GGTTAATAATTGTCCCAATTTCCATGATTATTCTGGCTACTATGCTAAACACCCAGAAGT
                      ____________________________________________________________
consensus             GGTTAATAATTGTCCCAATTTCCATGATTATTCTGGCTACTATGCTAAACACCCAGAAGT
 
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JMSF017J23-           GAATTACAATTACAATTACTCTGTGTATAGTTCCAGTGAGCCAAAGGTGATTCAGTACGA
JMFF036O13-           GAATTACAATTACAATTACTCTGT                                    
JMFF026I10-           GAATTACAATTACAATTACTCTGTGTATAGTTCCAGTGAGCCAAAGGTGATTCAGTACGA
rJMSF017J23+                                                                  ACGA
                      ____________________________________________________________
consensus             GAATTACAATTACAATTACTCTGTGTATAGTTCCAGTGAGCCAAAGGTGATTCAGTACGA
 
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JMSF017J23-           TGATGGTGGGTATGGGTTTTCGGAGACGAAGTTTATAGTTTCATACTCAACCTTA     
JMFF026I10-           TGATGGTGGGTATGGGTTTTCGGAGACGAAGTTTATAGTTTCATACTCAACCTTAGAGCC
rJMSF017J23+          TGATGGTGGGTATGGGTTTTCGGAGACGAAGTTTATAGTTTCATACTCNACCTTAGAGCC
                      ____________________________________________________________
consensus             TGATGGTGGGTATGGGTTTTCGGAGACGAAGTTTATAGTTTCATACTCAACCTTAGAGCC
 
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JMFF026I10-           ACAAGATGACACTGATTTTGATGAGTATGACCCAGACCCTTATGATGGTGGCTATGATAT
rJMSF017J23+          ACAAGATGACACTGATTTTGATGAGTATGACCCAGACCCTTATGATGGTGGCTATGATAT
                      ____________________________________________________________
consensus             ACAAGATGACACTGATTTTGATGAGTATGACCCAGACCCTTATGATGGTGGCTATGATAT
 
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JMFF026I10-           TGCTGAAACCTATGGCAAACCCCTTCCCCCTTCTAGTAAAACCTGTTACCCTCGTTCCAC
rJMSF017J23+          TGCTGAAACCTATGGCAAACCCCTTCCCCCTTCTAGTAAAACCTGTTACCCTCGTTCCAC
rJMFF026I10+                                                                    AC
                      ____________________________________________________________
consensus             TGCTGAAACCTATGGCAAACCCCTTCCCCCTTCTAGTAAAACCTGTTACCCTCGTTCCAC
 
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JMFF026I10-           CACAAACACCCTTCTTCCA                                         
rJMSF017J23+          CACAAACACCCTTCTTCCAGAACCTTTCTCCCATGGATCTATCCCTTCCAATTCTCCCCA
rJMFF026I10+          CACAAACACCNTTNTTCCAGAACCTTTNTCCCATGGATCTATCCCTTCCAATTCTCCCCA
rJMFF036O13+                                                    CCCTTCCAATTCTCCCCA
                      ____________________________________________________________
consensus             CACAAACACCCTTCTTCCAGAACCTTTCTCCCATGGATCTATCCCTTCCAATTCTCCCCA
 
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rJMSF017J23+          TGGAAAAGACCCAAAAGGCATTCATGATCAACCAGTAGTAAAACCCAGCAAGGAAACTGA
rJMFF026I10+          TGGAAAAGACCCAAAAGGCATTCATGATCAACCAGTAGTAAAACCCAGCAAGGAAACTGA
rJMFF036O13+          TGGAAAAGACCCAAAAGGCATTCATGATCAACCAGTAGTAAAACCCAGCAAGGAAACTGA
                      ____________________________________________________________
consensus             TGGAAAAGACCCAAAAGGCATTCATGATCAACCAGTAGTAAAACCCAGCAAGGAAACTGA
 
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rJMSF017J23+          ACCAGAGATTGCCAAAGAGAGGGATATAGTCCCCACTGATTCTGGAAAATTTGAGGATCT
rJMFF026I10+          ACCAGAGATTGCCAAAGAGAGGGATATAGTCCCCACTGATTCTGGAAAATTTGAGGATCT
rJMFF036O13+          ACCAGAGATTGCCAAAGAGAGGGATATAGTCCCCACTGATTCTGGAAAATTTGAGGATNT
                      ____________________________________________________________
consensus             ACCAGAGATTGCCAAAGAGAGGGATATAGTCCCCACTGATTCTGGAAAATTTGAGGATCT
 
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rJMSF017J23+          AAATAAGGGTAATGAAAATTCTTCCAAGAATGATGAAAATGGTTATGGGTATGGGTATGA
rJMFF026I10+          AAATAAGGGTAATGAAAATTCTTCCAAGAATGATGAAAATGGTTATGGGTATGGGTATGA
rJMFF036O13+          AAATAAGGGTAATGAAAATTNTTCCAAGAATGATGAAAATGGTTATGGGTATGGGTATGA
                      ____________________________________________________________
consensus             AAATAAGGGTAATGAAAATTCTTCCAAGAATGATGAAAATGGTTATGGGTATGGGTATGA
 
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rJMSF017J23+          TTACCAGGTTGGTAGTATTCCTTATGGGTATGGGTTGGAGAGTGTGGATATATGTGACAG
rJMFF026I10+          TTACCAGGTTGGTAGTATTCCTTATGGGTATGGGTTGGAGAGTGTGGATATATGTGACAG
rJMFF036O13+          TTACCAGGTTGGTAGTATTCCTTATGGGTATGGGTTGGAGAGTGTGGATATATGTGACAG
                      ____________________________________________________________
consensus             TTACCAGGTTGGTAGTATTCCTTATGGGTATGGGTTGGAGAGTGTGGATATATGTGACAG
 
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rJMSF017J23+          TATATTTGGTTACTGGCCTTGTTGGGAGAAGTACCAGAAAGGGAATTGTGAGGTGAGGGA
rJMFF026I10+          TATATTTGGTTACTGGCCTTGTTGGGAGAAGTACCAGAAAGGGAATTGTGAGGTGAGGGA
rJMFF036O13+          TATATTTGGTTACTGGCCTTGTTGGGAGAAGTACCAGAAAGGGAATTGTGAGGTGAGGGA
                      ____________________________________________________________
consensus             TATATTTGGTTACTGGCCTTGTTGGGAGAAGTACCAGAAAGGGAATTGTGAGGTGAGGGA
 
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rJMSF017J23+          TGAAGAAAGCAGCAGGAATCCATGGGAAAGTACAGCTGAGTATCTTTTTGGCAGCCCCTT
rJMFF026I10+          TGAAGAAAGCAGCAGGAATCCATGGGAAAGTACAGCTGAGTATCTTTTTGGCAGCCCCTT
rJMFF036O13+          TGAAGAAAGCAGCAGGAATCCATGGGAAAGTACAGCTGAGTATCTTTTTGGCAGCCCCTT
                      ____________________________________________________________
consensus             TGAAGAAAGCAGCAGGAATCCATGGGAAAGTACAGCTGAGTATCTTTTTGGCAGCCCCTT
 
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rJMSF017J23+          CGGATATGGTGGAGATGAAAGATTCGGAGGTTTCAGTTATGGCGGTTATTATCTGCAACC
rJMFF026I10+          CGGATATGGTGGAGATGAAAGATTCGGAGGTTTCAGTTATGGCGGTTATTATTTGCAACC
rJMFF036O13+          CGGATATGGTGGAGATGAAAGATTCGGAGGTTTCAGTTATGGCGGTTATTATNTGCAACC
                      ____________________________________________________________
consensus             CGGATATGGTGGAGATGAAAGATTCGGAGGTTTCAGTTATGGCGGTTATTATTTGCAACC
 
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rJMSF017J23+          GAATCAGAATCTCAATGACGGTTAATGTTTAAGATTCCTCGTACGCATATCTACCNCAGG
rJMFF026I10+          GAATCAGAATCTCAATGACGGTTAATGTTTAAGATTCCTCGTACGCATATCTACCACAGG
rJMFF036O13+          GAATCAGAATNTCAATGACGGTTAATGTTTAAGATTCCTCGTACGCATATNTACCACAGG
                      ____________________________________________________________
consensus             GAATCAGAATCTCAATGACGGTTAATGTTTAAGATTCCTCGTACGCATATCTACCACAGG
 
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rJMSF017J23+          GGCTGCCT-TGGTACTTAGTAGTTTCAACTCCTCAACTATAAAATATAA           
rJMFF026I10+          GGCTGCCTCTGGTCCTTAGTAGTTTCAACTCCTCAACTATAAAATATAANGTAATTTTTT
rJMFF036O13+          GGCTGCCT-TGGTACTTAGTAGTTTCAACTCCTCAACTATAAAATATAATGTAATTTTTT
                      ____________________________________________________________
consensus             GGCTGCCT-TGGTACTTAGTAGTTTCAACTCCTCAACTATAAAATATAATGTAATTTTTT
 
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rJMFF026I10+          TTTTATTTTTTTT                                               
rJMFF036O13+          TTTTATTTTTTTTAACAATAAGAACTCGGGTCGCCAGTAAACGCCTCTTGTAAAATAAAA
                      ____________________________________________________________
consensus             TTTTATTTTTTTTAACAATAAGAACTCGGGTCGCCAGTAAACGCCTCTTGTAAAATAAAA