Contig 002641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004N03Sequence506000779 (5)gb|KGN59867.1|1e-91hypothetical protein Csa_3G851190 [Cucumis sativus]734002641 (5)ref|XP_006360121.1|2e-85PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum]
JMFF016K11Sequence509000779 (5)gb|KGN59867.1|7e-91hypothetical protein Csa_3G851190 [Cucumis sativus]738002641 (5)ref|XP_006360121.1|9e-88PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum]
JMFF021J06Sequence542000779 (5)gb|KGN59867.1|4e-97hypothetical protein Csa_3G851190 [Cucumis sativus]699002641 (5)ref|XP_006360121.1|7e-64PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum]
JMFF036J10Sequence365000779 (5)ref|XP_010468329.1|3e-61PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Camelina sativa]705002641 (5)ref|XP_006360121.1|6e-78PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum]
JMSF026M01Sequence641000779 (5)gb|KGN59867.1|2e-123hypothetical protein Csa_3G851190 [Cucumis sativus]709002641 (5)ref|XP_006360121.1|2e-72PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016K11+ TCATTGTCAAAAGGCTGCTATCAATA
rJMFF004N03+ GTCAAAAGGCTGCTATCAATA
                      ____________________________________________________________
consensus TCATTGTCAAAAGGCTGCTATCAATA
 
. : . : . : . : . : . :
rJMSF026M01+ GTGGAAGCTGCAATGAACTGG-TGCTTGCTCACATGGATGATCCAG
rJMFF016K11+ CCTCCAATACTGGAGTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
rJMFF004N03+ CCTCCAATACTGGAGTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
rJMFF021J06+ TGGAAGCTGCAATGAACTGNTTGCTTGCTCACATGGATGATCCAG
rJMFF036J10+ GTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
                      ____________________________________________________________
consensus CCTCCAATACTGGAGTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
 
. : . : . : . : . : . :
rJMSF026M01+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF016K11+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF004N03+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF021J06+ ACATTGATGCTCCAATTTCCCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF036J10+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
                      ____________________________________________________________
consensus ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
 
. : . : . : . : . : . :
rJMSF026M01+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF016K11+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF004N03+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF021J06+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF036J10+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
                      ____________________________________________________________
consensus GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
 
. : . : . : . : . : . :
rJMSF026M01+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF016K11+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF004N03+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF021J06+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF036J10+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
                      ____________________________________________________________
consensus GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
 
. : . : . : . : . : . :
rJMSF026M01+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF016K11+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF004N03+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF021J06+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF036J10+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
                      ____________________________________________________________
consensus TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
 
. : . : . : . : . : . :
rJMSF026M01+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF016K11+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF004N03+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF021J06+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF036J10+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
                      ____________________________________________________________
consensus GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
 
. : . : . : . : . : . :
rJMSF026M01+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF016K11+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF004N03+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF021J06+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF036J10+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
                      ____________________________________________________________
consensus CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
 
. : . : . : . : . : . :
rJMSF026M01+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF016K11+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF004N03+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF021J06+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF036J10+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
                      ____________________________________________________________
consensus GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
 
. : . : . : . : . : . :
rJMSF026M01+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF016K11+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF004N03+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF021J06+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF036J10+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
                      ____________________________________________________________
consensus GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
 
. : . : . : . : . : . :
rJMSF026M01+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF016K11+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF004N03+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF021J06+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF036J10+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
                      ____________________________________________________________
consensus GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
 
. : . : . : . : . : . :
rJMSF026M01+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF016K11+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF004N03+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF021J06+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF036J10+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
                      ____________________________________________________________
consensus CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
 
. : . : . : . : . : . :
rJMSF026M01+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAAC
rJMFF016K11+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATA
rJMFF004N03+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATA
rJMFF021J06+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATA
rJMFF036J10+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATATCTGAAT
                      ____________________________________________________________
consensus AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATATCTGAAT