| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004N03 | Sequence | 506 | 000779 (5) | gb|KGN59867.1| | 1e-91 | hypothetical protein Csa_3G851190 [Cucumis sativus] | 734 | 002641 (5) | ref|XP_006360121.1| | 2e-85 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum] |
| JMFF016K11 | Sequence | 509 | 000779 (5) | gb|KGN59867.1| | 7e-91 | hypothetical protein Csa_3G851190 [Cucumis sativus] | 738 | 002641 (5) | ref|XP_006360121.1| | 9e-88 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum] |
| JMFF021J06 | Sequence | 542 | 000779 (5) | gb|KGN59867.1| | 4e-97 | hypothetical protein Csa_3G851190 [Cucumis sativus] | 699 | 002641 (5) | ref|XP_006360121.1| | 7e-64 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum] |
| JMFF036J10 | Sequence | 365 | 000779 (5) | ref|XP_010468329.1| | 3e-61 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Camelina sativa] | 705 | 002641 (5) | ref|XP_006360121.1| | 6e-78 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum] |
| JMSF026M01 | Sequence | 641 | 000779 (5) | gb|KGN59867.1| | 2e-123 | hypothetical protein Csa_3G851190 [Cucumis sativus] | 709 | 002641 (5) | ref|XP_006360121.1| | 2e-72 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMFF016K11+ TCATTGTCAAAAGGCTGCTATCAATA
rJMFF004N03+ GTCAAAAGGCTGCTATCAATA
____________________________________________________________
consensus TCATTGTCAAAAGGCTGCTATCAATA
. : . : . : . : . : . :
rJMSF026M01+ GTGGAAGCTGCAATGAACTGG-TGCTTGCTCACATGGATGATCCAG
rJMFF016K11+ CCTCCAATACTGGAGTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
rJMFF004N03+ CCTCCAATACTGGAGTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
rJMFF021J06+ TGGAAGCTGCAATGAACTGNTTGCTTGCTCACATGGATGATCCAG
rJMFF036J10+ GTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
____________________________________________________________
consensus CCTCCAATACTGGAGTGGAAGCTGCAATGAACTGGTTGCTTGCTCACATGGATGATCCAG
. : . : . : . : . : . :
rJMSF026M01+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF016K11+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF004N03+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF021J06+ ACATTGATGCTCCAATTTCCCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
rJMFF036J10+ ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
____________________________________________________________
consensus ACATTGATGCTCCAATTT-CCCAAGTAGGAAAAAATGTTGATATTGATCAATCACAAGTT
. : . : . : . : . : . :
rJMSF026M01+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF016K11+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF004N03+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF021J06+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
rJMFF036J10+ GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
____________________________________________________________
consensus GATACATTGGTTTCCTTTGGTTTTCATGAGGACCTTGCTAGGAAGGCACTGAAAGCATCG
. : . : . : . : . : . :
rJMSF026M01+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF016K11+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF004N03+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF021J06+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
rJMFF036J10+ GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
____________________________________________________________
consensus GGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAACAATCCCGGTGCTTCCGAGACA
. : . : . : . : . : . :
rJMSF026M01+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF016K11+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF004N03+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF021J06+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
rJMFF036J10+ TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
____________________________________________________________
consensus TCAGATATGGACACATCATGTAGTGATGGAACTTCAGTCGATGCTGCACTACCTGATGGT
. : . : . : . : . : . :
rJMSF026M01+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF016K11+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF004N03+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF021J06+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
rJMFF036J10+ GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
____________________________________________________________
consensus GGAGGAAGGTATAGGCTGATTGGACTAGTGAGCCATATTGGTACCTCAACCCAATGTGGT
. : . : . : . : . : . :
rJMSF026M01+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF016K11+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF004N03+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF021J06+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
rJMFF036J10+ CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
____________________________________________________________
consensus CATTACGTTGCTCATATCTATAAAGATGGTAGATGGGTAATTTTCAATGATGAGAAAGTT
. : . : . : . : . : . :
rJMSF026M01+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF016K11+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF004N03+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF021J06+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
rJMFF036J10+ GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
____________________________________________________________
consensus GGGGTCTCAAAGAATCCCCCCCTGGACATGGGATACCTGTACTTTTTTGAGAGACTCAGT
. : . : . : . : . : . :
rJMSF026M01+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF016K11+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF004N03+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF021J06+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
rJMFF036J10+ GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
____________________________________________________________
consensus GATTGAATGATGATGGAGGATTAGAGGTTAAACAAGTTGATAGCAGAGGGGATAGTAGAG
. : . : . : . : . : . :
rJMSF026M01+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF016K11+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF004N03+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF021J06+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
rJMFF036J10+ GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
____________________________________________________________
consensus GCCTAGAGGGTGGACATTGGTTCTGTTAATCATTGTGATACATGAAGTTAGATCAAAGTA
. : . : . : . : . : . :
rJMSF026M01+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF016K11+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF004N03+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF021J06+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
rJMFF036J10+ CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
____________________________________________________________
consensus CTTAGTCACTCATTCAACTTCCATCTCAATTCAACTTCCTTGACTTTAATGGGGGGTTCA
. : . : . : . : . : . :
rJMSF026M01+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAAC
rJMFF016K11+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATA
rJMFF004N03+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATA
rJMFF021J06+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATA
rJMFF036J10+ AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATATCTGAAT
____________________________________________________________
consensus AATCCCAAAACACAAGCACTTGGCTTTATACTCTTTTGATGTTGTAAAACATATCTGAAT