Contig 002638:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036E02Sequence567001732 (2)ref|XP_002321279.1|1e-43membrane family protein [Populus trichocarpa] gb|EEE99594.1| membrane family pro641002638 (2)ref|XP_009605725.1|4e-40PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X
JMSF002N03Sequence353001732 (2)ref|XP_006356765.1|2e-11PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like isof719002638 (2)ref|XP_009785282.1|1e-81PREDICTED: thiamine-repressible mitochondrial transport protein THI74 [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF002N03+ TTGTGTTCTNGGGAGAAAAGTTTACA
                      ____________________________________________________________
consensus TTGTGTTCTNGGGAGAAAAGTTTACA
 
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rJMSF002N03+ TGGGTGAAGCTGCTTAGTGTTCTGCTTTGTATGGGTGGAACAATCATTGTCAGCTTGGGT
                      ____________________________________________________________
consensus TGGGTGAAGCTGCTTAGTGTTCTGCTTTGTATGGGTGGAACAATCATTGTCAGCTTGGGT
 
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rJMSF002N03+ GACTCAAAATCTGGAATATCTGCGGTTGCTTCAAACCCTATTGTTGGAGACATTCTTGCT
                      ____________________________________________________________
consensus GACTCAAAATCTGGAATATCTGCGGTTGCTTCAAACCCTATTGTTGGAGACATTCTTGCT
 
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rJMSF002N03+ CTTCTTTCGTCAGCCTTGTATGCTGTGTATATAACTCTTATTCGTAAAAAGCTGCCTGAT
                      ____________________________________________________________
consensus CTTCTTTCGTCAGCCTTGTATGCTGTGTATATAACTCTTATTCGTAAAAAGCTGCCTGAT
 
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rJMSF002N03+ GATGATGATGAGAAAAGTGGTCAAGTCAGTATGGCACAGTTTCTCGGTTTTTTAGGTTTT
                      ____________________________________________________________
consensus GATGATGATGAGAAAAGTGGTCAAGTCAGTATGGCACAGTTTCTCGGTTTTTTAGGTTTT
 
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rJMSF002N03+ TTCAACCTCCTGATATTCTTTCCAGTGATCCTTGTACTTAACTTTGCCAAGCTGGAGTTA
rJMFF036E02+ TTCCAGTGATCCTTGTACTTAACTTTGCCAAGCTGGAGTTA
                      ____________________________________________________________
consensus TTCAACCTCCTGATATTCTTTCCAGTGATCCTTGTACTTAACTTTGCCAAGCTGGAGTTA
 
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rJMSF002N03+ TTCACCGCACTTACCTGGAAGCAGCTTGGTCTCATTACTGGTAAAGGGCTGCTGGACAAC
rJMFF036E02+ TTCACCGCACTTACCTGGAAGCAGCTTGGTCTCATTACTGGTAAAGGGCTGCTGGACAAC
                      ____________________________________________________________
consensus TTCACCGCACTTACCTGGAAGCAGCTTGGTCTCATTACTGGTAAAGGGCTGCTGGACAAC
 
. : . : . : . : . : . :
rJMSF002N03+ GTGTTGAGTGATTACCTGTGGGCGAAAGCGATCCTTTTGACAACTACTACGGTGGCAACA
rJMFF036E02+ GTGTTGAGTGATTACCTGTGGGCGAAAGCGATCCTTTTGACAACTACTACGGTGGCAACA
                      ____________________________________________________________
consensus GTGTTGAGTGATTACCTGTGGGCGAAAGCGATCCTTTTGACAACTACTACGGTGGCAACA
 
. : . : . : . : . : . :
rJMSF002N03+ GCAGGCCTCACAATTCAGGTTCCGTTGGCTGCCATTGTGGACACGCTTACTGGGAATTCA
rJMFF036E02+ GCAGGCCTCACAATTCAGGTTCCGTTGGCTGCCATTGTGGACACGCTTACTGGGAATTCA
                      ____________________________________________________________
consensus GCAGGCCTCACAATTCAGGTTCCGTTGGCTGCCATTGTGGACACGCTTACTGGGAATTCA
 
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rJMSF002N03+ CCTGCTCTGCCAGATTGCATTGGAGCTGCTGCTGTAATGCTTGGTTTTGCAGGCATTAAT
rJMFF036E02+ CCTGCTCTGCCAGATTGCATTGGAGCTGCTGCTGTAATGCTTGGTTTTGCAGGCATTAAT
                      ____________________________________________________________
consensus CCTGCTCTGCCAGATTGCATTGGAGCTGCTGCTGTAATGCTTGGTTTTGCAGGCATTAAT
 
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rJMSF002N03+ ATGCCTTCAAATGCATGTTCTAAATCTGAAGAAGTAGTAGGCATCGAACTAGAAGATGGA
rJMFF036E02+ ATGCCTTCAAATGCATGTTCTAAATCTGAAGAAGTAGTAGGCATCGAACTAGAAGATGGA
                      ____________________________________________________________
consensus ATGCCTTCAAATGCATGTTCTAAATCTGAAGAAGTAGTAGGCATCGAACTAGAAGATGGA
 
. : . : . : . : . : . :
rJMSF002N03+ AATTCACAGCCCACCCATCAAGACCATGGCACATCTAACCAAGTTATGAATTGATTGGGG
rJMFF036E02+ AATTCACAGCCCACCCATCAAGACCATGGCACATCTAACCAAGTTATGAATTGATTGGGG
                      ____________________________________________________________
consensus AATTCACAGCCCACCCATCAAGACCATGGCACATCTAACCAAGTTATGAATTGATTGGGG
 
. : . : . : . : . : . :
rJMSF002N03+ GGGATATCAGATATGCTATGCTAAACCAATTTT
rJMFF036E02+ GGGATATCAGATATGCTATGCTAAACCAATTTTTGTTTTAATTGAGGTCAAGTAAAAGTA
                      ____________________________________________________________
consensus GGGATATCAGATATGCTATGCTAAACCAATTTTTGTTTTAATTGAGGTCAAGTAAAAGTA
 
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rJMFF036E02+ ATAGTCTCTCAGAAAAGAAAATGGAACACGGAATAGTTTACACTACTTTTTGTTATTATT
                      ____________________________________________________________
consensus ATAGTCTCTCAGAAAAGAAAATGGAACACGGAATAGTTTACACTACTTTTTGTTATTATT
 
. : . : . : . : . : . :
rJMFF036E02+ CTTTATTATTTTTTTTGAAAGGAGCCGGTAAAGGCATATATTAGAGAAAAGTTGTAATAG
                      ____________________________________________________________
consensus CTTTATTATTTTTTTTGAAAGGAGCCGGTAAAGGCATATATTAGAGAAAAGTTGTAATAG
 
. : . : . : . : . : . :
rJMFF036E02+ CGTCAGGAGGAATAGACTCTCAGTACATAGCAGAAGATTGAGTAAAAGCCAAAACAGCTA
                      ____________________________________________________________
consensus CGTCAGGAGGAATAGACTCTCAGTACATAGCAGAAGATTGAGTAAAAGCCAAAACAGCTA