Contig 002638:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036E02Sequence567001732 (2)ref|XP_002321279.1|1e-43membrane family protein [Populus trichocarpa] gb|EEE99594.1| membrane family pro641002638 (2)ref|XP_009605725.1|4e-40PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X
JMSF002N03Sequence353001732 (2)ref|XP_006356765.1|2e-11PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like isof719002638 (2)ref|XP_009785282.1|1e-81PREDICTED: thiamine-repressible mitochondrial transport protein THI74 [Nicotian

Alignment

This contig is upended


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rJMSF002N03+                                            TTGTGTTCTNGGGAGAAAAGTTTACA
                      ____________________________________________________________
consensus                                               TTGTGTTCTNGGGAGAAAAGTTTACA
 
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rJMSF002N03+          TGGGTGAAGCTGCTTAGTGTTCTGCTTTGTATGGGTGGAACAATCATTGTCAGCTTGGGT
                      ____________________________________________________________
consensus             TGGGTGAAGCTGCTTAGTGTTCTGCTTTGTATGGGTGGAACAATCATTGTCAGCTTGGGT
 
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rJMSF002N03+          GACTCAAAATCTGGAATATCTGCGGTTGCTTCAAACCCTATTGTTGGAGACATTCTTGCT
                      ____________________________________________________________
consensus             GACTCAAAATCTGGAATATCTGCGGTTGCTTCAAACCCTATTGTTGGAGACATTCTTGCT
 
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rJMSF002N03+          CTTCTTTCGTCAGCCTTGTATGCTGTGTATATAACTCTTATTCGTAAAAAGCTGCCTGAT
                      ____________________________________________________________
consensus             CTTCTTTCGTCAGCCTTGTATGCTGTGTATATAACTCTTATTCGTAAAAAGCTGCCTGAT
 
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rJMSF002N03+          GATGATGATGAGAAAAGTGGTCAAGTCAGTATGGCACAGTTTCTCGGTTTTTTAGGTTTT
                      ____________________________________________________________
consensus             GATGATGATGAGAAAAGTGGTCAAGTCAGTATGGCACAGTTTCTCGGTTTTTTAGGTTTT
 
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rJMSF002N03+          TTCAACCTCCTGATATTCTTTCCAGTGATCCTTGTACTTAACTTTGCCAAGCTGGAGTTA
rJMFF036E02+                             TTCCAGTGATCCTTGTACTTAACTTTGCCAAGCTGGAGTTA
                      ____________________________________________________________
consensus             TTCAACCTCCTGATATTCTTTCCAGTGATCCTTGTACTTAACTTTGCCAAGCTGGAGTTA
 
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rJMSF002N03+          TTCACCGCACTTACCTGGAAGCAGCTTGGTCTCATTACTGGTAAAGGGCTGCTGGACAAC
rJMFF036E02+          TTCACCGCACTTACCTGGAAGCAGCTTGGTCTCATTACTGGTAAAGGGCTGCTGGACAAC
                      ____________________________________________________________
consensus             TTCACCGCACTTACCTGGAAGCAGCTTGGTCTCATTACTGGTAAAGGGCTGCTGGACAAC
 
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rJMSF002N03+          GTGTTGAGTGATTACCTGTGGGCGAAAGCGATCCTTTTGACAACTACTACGGTGGCAACA
rJMFF036E02+          GTGTTGAGTGATTACCTGTGGGCGAAAGCGATCCTTTTGACAACTACTACGGTGGCAACA
                      ____________________________________________________________
consensus             GTGTTGAGTGATTACCTGTGGGCGAAAGCGATCCTTTTGACAACTACTACGGTGGCAACA
 
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rJMSF002N03+          GCAGGCCTCACAATTCAGGTTCCGTTGGCTGCCATTGTGGACACGCTTACTGGGAATTCA
rJMFF036E02+          GCAGGCCTCACAATTCAGGTTCCGTTGGCTGCCATTGTGGACACGCTTACTGGGAATTCA
                      ____________________________________________________________
consensus             GCAGGCCTCACAATTCAGGTTCCGTTGGCTGCCATTGTGGACACGCTTACTGGGAATTCA
 
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rJMSF002N03+          CCTGCTCTGCCAGATTGCATTGGAGCTGCTGCTGTAATGCTTGGTTTTGCAGGCATTAAT
rJMFF036E02+          CCTGCTCTGCCAGATTGCATTGGAGCTGCTGCTGTAATGCTTGGTTTTGCAGGCATTAAT
                      ____________________________________________________________
consensus             CCTGCTCTGCCAGATTGCATTGGAGCTGCTGCTGTAATGCTTGGTTTTGCAGGCATTAAT
 
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rJMSF002N03+          ATGCCTTCAAATGCATGTTCTAAATCTGAAGAAGTAGTAGGCATCGAACTAGAAGATGGA
rJMFF036E02+          ATGCCTTCAAATGCATGTTCTAAATCTGAAGAAGTAGTAGGCATCGAACTAGAAGATGGA
                      ____________________________________________________________
consensus             ATGCCTTCAAATGCATGTTCTAAATCTGAAGAAGTAGTAGGCATCGAACTAGAAGATGGA
 
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rJMSF002N03+          AATTCACAGCCCACCCATCAAGACCATGGCACATCTAACCAAGTTATGAATTGATTGGGG
rJMFF036E02+          AATTCACAGCCCACCCATCAAGACCATGGCACATCTAACCAAGTTATGAATTGATTGGGG
                      ____________________________________________________________
consensus             AATTCACAGCCCACCCATCAAGACCATGGCACATCTAACCAAGTTATGAATTGATTGGGG
 
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rJMSF002N03+          GGGATATCAGATATGCTATGCTAAACCAATTTT                           
rJMFF036E02+          GGGATATCAGATATGCTATGCTAAACCAATTTTTGTTTTAATTGAGGTCAAGTAAAAGTA
                      ____________________________________________________________
consensus             GGGATATCAGATATGCTATGCTAAACCAATTTTTGTTTTAATTGAGGTCAAGTAAAAGTA
 
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rJMFF036E02+          ATAGTCTCTCAGAAAAGAAAATGGAACACGGAATAGTTTACACTACTTTTTGTTATTATT
                      ____________________________________________________________
consensus             ATAGTCTCTCAGAAAAGAAAATGGAACACGGAATAGTTTACACTACTTTTTGTTATTATT
 
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rJMFF036E02+          CTTTATTATTTTTTTTGAAAGGAGCCGGTAAAGGCATATATTAGAGAAAAGTTGTAATAG
                      ____________________________________________________________
consensus             CTTTATTATTTTTTTTGAAAGGAGCCGGTAAAGGCATATATTAGAGAAAAGTTGTAATAG
 
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rJMFF036E02+          CGTCAGGAGGAATAGACTCTCAGTACATAGCAGAAGATTGAGTAAAAGCCAAAACAGCTA
                      ____________________________________________________________
consensus             CGTCAGGAGGAATAGACTCTCAGTACATAGCAGAAGATTGAGTAAAAGCCAAAACAGCTA