Contig 002637:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036C13Sequence517006276 (7)ref|XP_009798925.1|7e-10PREDICTED: protein MEI2-like 4 isoform X2 [Nicotiana sylvestris]607002637 (2)ref|NP_001132246.1|9e-68hypothetical protein [Zea mays] gb|ACF81018.1| unknown [Zea mays] gb|AFW71581.1|
JMSF025L09Sequence677006276 (7)620002637 (2)ref|NP_001132246.1|1e-52hypothetical protein [Zea mays] gb|ACF81018.1| unknown [Zea mays] gb|AFW71581.1|

Alignment

This contig is upended


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rJMSF025L09+                                            CGNTAAGCGGACAACCCTAATGNTAA
                      ____________________________________________________________
consensus                                               CGNTAAGCGGACAACCCTAATGNTAA
 
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rJMSF025L09+          AGNACNTTCCTNACAAGTNCNCNTNAAAAATGCTTTTAGCTGCAATTGATGATCGCCATA
rJMFF036C13+                                   AAAAATGNTTTTAGNTGCAATTGATGATNGCCATA
                      ____________________________________________________________
consensus             AGNACNTTCCTNACAAGTNCNCNTNAAAAATGCTTTTAGCTGCAATTGATGATCGCCATA
 
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rJMSF025L09+          AAGGNANTTATGNTTTNATTTATTTGCCCNTCGNTTTTAAGAACAAATGCAANGTTGGNT
rJMFF036C13+          AAGGAACTTATGATTTCATTTATTTGCCCATNGATTTTAAGAACAAATGCAATGTNGGGT
                      ____________________________________________________________
consensus             AAGGAACTTATGATTTCATTTATTTGCCCATCGATTTTAAGAACAAATGCAATGTTGGGT
 
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rJMSF025L09+          ACGCNTTTATCNATATGNCTGNTCCNTCNTTCNTTGTTCCNTTTTATCNTGCTTTTAATG
rJMFF036C13+          ACGCATTTATCAATATGNCTGATCCTTCATTCATTGTTCCATTTTATCATGNTTTTAATG
                      ____________________________________________________________
consensus             ACGCATTTATCAATATGNCTGATCCTTCATTCATTGTTCCATTTTATCATGCTTTTAATG
 
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rJMSF025L09+          GCNAGAAATGGGAAAAGTTNNACNGTGAAAAGGNGGCNTCNCTTGCATATGCTNGCATCC
rJMFF036C13+          GCAAGAAATGGGAAAAGTTCAACAGTGAAAAGGNGGCATCNCTTGCATATGNTNGCATCC
                      ____________________________________________________________
consensus             GCAAGAAATGGGAAAAGTTCAACAGTGAAAAGGNGGCATCNCTTGCATATGCTNGCATCC
 
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rJMSF025L09+          NGGGAAAAGCTGCCCTTNTTGCTCNCTTCCNGAATTNTAGCTTGATGAANGAAGATNAGN
rJMFF036C13+          AGGGAAAANNTGCCCTTATTGNTCNCTTCCAGAATTTTAGCTTGANGAANGAAGATAAGN
                      ____________________________________________________________
consensus             AGGGAAAAGCTGCCCTTATTGCTCNCTTCCAGAATTTTAGCTTGATGAANGAAGATAAGN
 
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rJMSF025L09+          GATGCCGTCCTATTTTTTTCCNTACTGATGGCCCCNATGCNGGNGNTCNGGNGCCCTTCC
rJMFF036C13+          GATGCCGTCCTATTTTTTTCCATNNTGATGGCCCCAANGCAGGNGATCAGGNGCCCTTCC
                      ____________________________________________________________
consensus             GATGCCGTCCTATTTTTTTCCATACTGATGGCCCCAATGCAGGNGATCAGGNGCCCTTCC
 
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rJMSF025L09+          CCNTGGGNGTAAATGNGNGGTCNAGNCCCNACNAGNGTNGNGGCAGCNCNGGNGAAGAAA
rJMFF036C13+          CCATGGGNGTAAANGNGAGGTCAAGACCCAACAAGAGTNGAGGCAGCNCAGGNGAAGAAA
                      ____________________________________________________________
consensus             CCATGGGNGTAAATGNGAGGTCAAGACCCAACAAGAGTNGAGGCAGCNCAGGNGAAGAAA
 
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rJMSF025L09+          ACNACCCTGAAATCCNTTTAAGTTCNTCAAATGGGGNGTCATNTTGGCNTGGNGNGGTTT
rJMFF036C13+          ACAACCNTGAAATCCNTTTAAGTTCATCAAANGGGGAGTCATNTTGGCANGGAGAGGTTT
                      ____________________________________________________________
consensus             ACAACCCTGAAATCCNTTTAAGTTCATCAAATGGGGAGTCATNTTGGCATGGAGAGGTTT
 
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rJMSF025L09+          TCAAGGNTTCAAATTAAAAAAAAAAAATGACTGGACTGGACTGGACTGCTTCCTAGCTCA
rJMFF036C13+          TCAAGGATTNAAATTAAAAAAAAAAAATGACTGGACTGGACTGGACTGCTTCCTAGCTCA
                      ____________________________________________________________
consensus             TCAAGGATTCAAATTAAAAAAAAAAAATGACTGGACTGGACTGGACTGCTTCCTAGCTCA
 
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rJMSF025L09+          TTATTGGCACTACTAACTAACCTTCTAGGGATGAGACTAATT                  
rJMFF036C13+          TTATTGGCACTACTAACTAACCTTCTAGGGATGAGACTAATTTCACCCAAAAATTTCTTT
                      ____________________________________________________________
consensus             TTATTGGCACTACTAACTAACCTTCTAGGGATGAGACTAATTTCACCCAAAAATTTCTTT