Contig 002636:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035O01Sequence613007433 (5)ref|XP_011085122.1|8e-71PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i703002636 (4)ref|XP_009785816.1|1e-64PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF031A16Sequence645007433 (5)ref|XP_011085122.1|5e-86PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i783002636 (4)ref|XP_009785816.1|7e-89PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF036I08Sequence632007433 (5)ref|XP_011085122.1|1e-86PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i777002636 (4)ref|XP_009785816.1|1e-84PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF048A23Sequence618007433 (5)ref|XP_011085122.1|9e-81PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i699002636 (4)ref|XP_009785816.1|2e-76PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF031A16+ CGGAGTGGTAGTAACACG
                      ____________________________________________________________
consensus CGGAGTGGTAGTAACACG
 
. : . : . : . : . : . :
rJMSF036I08+ AAGGAAAGCAAGCAAATGCACTTTTTTGGTC
rJMSF031A16+ GGGAGAGTTTCGNAAACTCGCAACGCTTAAAGGAAAGCAAGCAAATGCACTTTTTTGGTC
                      ____________________________________________________________
consensus GGGAGAGTTTCGNAAACTCGCAACGCTTAAAGGAAAGCAAGCAAATGCACTTTTTTGGTC
 
. : . : . : . : . : . :
rJMSF036I08+ ACCTGCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
rJMSF048A23+ GCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
rJMSF031A16+ ACCTGCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
rJMFF035O01+ GGAGTT
                      ____________________________________________________________
consensus ACCTGCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
 
. : . : . : . : . : . :
rJMSF036I08+ CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
rJMSF048A23+ CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
rJMSF031A16+ CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
rJMFF035O01+ CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
                      ____________________________________________________________
consensus CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
 
. : . : . : . : . : . :
rJMSF036I08+ TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
rJMSF048A23+ TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
rJMSF031A16+ TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
rJMFF035O01+ TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
                      ____________________________________________________________
consensus TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
 
. : . : . : . : . : . :
rJMSF036I08+ GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
rJMSF048A23+ GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
rJMSF031A16+ GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
rJMFF035O01+ GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
                      ____________________________________________________________
consensus GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
 
. : . : . : . : . : . :
rJMSF036I08+ TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
rJMSF048A23+ TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
rJMSF031A16+ TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
rJMFF035O01+ TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
                      ____________________________________________________________
consensus TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
 
. : . : . : . : . : . :
rJMSF036I08+ GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
rJMSF048A23+ GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
rJMSF031A16+ GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
rJMFF035O01+ GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
                      ____________________________________________________________
consensus GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
 
. : . : . : . : . : . :
rJMSF036I08+ TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
rJMSF048A23+ TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
rJMSF031A16+ TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
rJMFF035O01+ TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
                      ____________________________________________________________
consensus TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
 
. : . : . : . : . : . :
rJMSF036I08+ ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
rJMSF048A23+ ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
rJMSF031A16+ ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
rJMFF035O01+ ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
                      ____________________________________________________________
consensus ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
 
. : . : . : . : . : . :
rJMSF036I08+ CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
rJMSF048A23+ CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
rJMSF031A16+ CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
rJMFF035O01+ CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
                      ____________________________________________________________
consensus CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
 
. : . : . : . : . : . :
rJMSF036I08+ AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
rJMSF048A23+ AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
rJMSF031A16+ AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
rJMFF035O01+ AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
                      ____________________________________________________________
consensus AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
 
. : . : . : . : . : . :
rJMSF036I08+ CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
rJMSF048A23+ CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
rJMSF031A16+ CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
rJMFF035O01+ CCACGCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
                      ____________________________________________________________
consensus CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
 
. : . : . : . : . : . :
rJMSF036I08+ ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTAC
rJMSF048A23+ ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTAC
rJMSF031A16+ ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTAC
rJMFF035O01+ ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTACATGTAATGAACATGGAGAATGTAGTT
                      ____________________________________________________________
consensus ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTACATGTAATGAACATGGAGAATGTAGTT