Contig 002636:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035O01Sequence613007433 (5)ref|XP_011085122.1|8e-71PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i703002636 (4)ref|XP_009785816.1|1e-64PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF031A16Sequence645007433 (5)ref|XP_011085122.1|5e-86PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i783002636 (4)ref|XP_009785816.1|7e-89PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF036I08Sequence632007433 (5)ref|XP_011085122.1|1e-86PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i777002636 (4)ref|XP_009785816.1|1e-84PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF048A23Sequence618007433 (5)ref|XP_011085122.1|9e-81PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i699002636 (4)ref|XP_009785816.1|2e-76PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [

Alignment

This contig is upended


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rJMSF031A16+                                                    CGGAGTGGTAGTAACACG
                      ____________________________________________________________
consensus                                                       CGGAGTGGTAGTAACACG
 
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rJMSF036I08+                                       AAGGAAAGCAAGCAAATGCACTTTTTTGGTC
rJMSF031A16+          GGGAGAGTTTCGNAAACTCGCAACGCTTAAAGGAAAGCAAGCAAATGCACTTTTTTGGTC
                      ____________________________________________________________
consensus             GGGAGAGTTTCGNAAACTCGCAACGCTTAAAGGAAAGCAAGCAAATGCACTTTTTTGGTC
 
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rJMSF036I08+          ACCTGCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
rJMSF048A23+              GCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
rJMSF031A16+          ACCTGCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
rJMFF035O01+                                                                GGAGTT
                      ____________________________________________________________
consensus             ACCTGCAGGCCGCTTTATTATATTGGCTGGCTTGAAGGGCTTCAACGGGCAGTTGGAGTT
 
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rJMSF036I08+          CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
rJMSF048A23+          CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
rJMSF031A16+          CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
rJMFF035O01+          CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
                      ____________________________________________________________
consensus             CTTTGATGTCGATGAGCTCGAAACTATGGCCACAGCTGAGCATTTCATGGCCACAGATAT
 
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rJMSF036I08+          TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
rJMSF048A23+          TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
rJMSF031A16+          TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
rJMFF035O01+          TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
                      ____________________________________________________________
consensus             TGAATGGGATCCTACTGGAAGATATGTTGCAACGGCTCTCACTTCTGTTCATGAGATGGA
 
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rJMSF036I08+          GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
rJMSF048A23+          GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
rJMSF031A16+          GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
rJMFF035O01+          GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
                      ____________________________________________________________
consensus             GAATGGTTTCAATATCTGGTCTTTCCATGGCAAGCTGCTGTATCGGATTCTGAAGGATCA
 
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rJMSF036I08+          TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
rJMSF048A23+          TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
rJMSF031A16+          TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
rJMFF035O01+          TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
                      ____________________________________________________________
consensus             TTTCTTCCAATTCTTGTGGAGACCAAGGCCACCACCCTTCTTGACCCGCGAGAAAGAGGA
 
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rJMSF036I08+          GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
rJMSF048A23+          GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
rJMSF031A16+          GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
rJMFF035O01+          GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
                      ____________________________________________________________
consensus             GGAGATTCTAAAGAATCTCAAGAAATACAGCAAGAAGTACGAGGCGGAGGATCAGGATGT
 
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rJMSF036I08+          TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
rJMSF048A23+          TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
rJMSF031A16+          TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
rJMFF035O01+          TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
                      ____________________________________________________________
consensus             TTCGTTGCAGTTGAGTGAGCAGGACCGCCAGAAAAGAAAGAAGTTGAAGGAAGATTGGGA
 
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rJMSF036I08+          ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
rJMSF048A23+          ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
rJMSF031A16+          ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
rJMFF035O01+          ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
                      ____________________________________________________________
consensus             ATCATGGATGAATGAGTGGAAGAGATTACATGAAGAGGAGAAACTGGAGAGGGAAAGGCT
 
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rJMSF036I08+          CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
rJMSF048A23+          CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
rJMSF031A16+          CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
rJMFF035O01+          CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
                      ____________________________________________________________
consensus             CCGTGATGGGGAGGCGAGCGATGATGAAGAAGAATACGAGGCCAAGGAAGTCGAAGTAGA
 
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rJMSF036I08+          AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
rJMSF048A23+          AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
rJMSF031A16+          AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
rJMFF035O01+          AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
                      ____________________________________________________________
consensus             AGAATTGTTGGATGTTTCGGAGGAGATTATTTCTTTTGACTGATTTCCCCATTACTTACC
 
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rJMSF036I08+          CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
rJMSF048A23+          CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
rJMSF031A16+          CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
rJMFF035O01+          CCACGCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
                      ____________________________________________________________
consensus             CCACCCCCACTCCCAAAATTTTCATATGATTACTTTTTTTCTTTAGGTGTTTTAATTCTT
 
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rJMSF036I08+          ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTAC                          
rJMSF048A23+          ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTAC                          
rJMSF031A16+          ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTAC                          
rJMFF035O01+          ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTACATGTAATGAACATGGAGAATGTAGTT
                      ____________________________________________________________
consensus             ATTCAGTTATTGCTACCTAAAGTTGTTCCCTTACATGTAATGAACATGGAGAATGTAGTT