| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034C04 | Sequence | 397 | 000902 (4) | emb|CDP01287.1| | 6e-06 | unnamed protein product [Coffea canephora] | 697 | 002631 (4) | emb|CDP01287.1| | 2e-12 | unnamed protein product [Coffea canephora] |
| JMSF003F21 | Sequence | 379 | 000902 (4) | 669 | 002631 (4) | ref|XP_011017157.1| | 1e-11 | PREDICTED: cyclin-D3-1-like [Populus euphratica] | |||
| JMSF040D01 | Sequence | 645 | 000902 (4) | ref|XP_011074408.1| | 1e-44 | PREDICTED: cyclin-D3-3-like [Sesamum indicum] | 821 | 002631 (4) | emb|CAB61222.1| | 5e-88 | cyclin D3a [Antirrhinum majus] |
| JMSF047J21 | Sequence | 684 | 000902 (4) | emb|CDP01287.1| | 7e-51 | unnamed protein product [Coffea canephora] | 716 | 002631 (4) | ref|XP_006342647.1| | 7e-29 | PREDICTED: cyclin-D3-3-like isoform X2 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF040D01+ GAAGCCATGGATGAGTC
____________________________________________________________
consensus GAAGCCATGGATGAGTC
. : . : . : . : . : . :
rJMSF040D01+ AACTCGCTGCTGTGGCTTGTCTCTCTCTTGCTGCTAAAGTTGAAGAGACCTTTGTCCCTC
____________________________________________________________
consensus AACTCGCTGCTGTGGCTTGTCTCTCTCTTGCTGCTAAAGTTGAAGAGACCTTTGTCCCTC
. : . : . : . : . : . :
rJMSF040D01+ TCCTCCTAGATTTCCAAGTTGAGGAATCGGAGTATGTGTTTGAGGCGAAAACCATCCAAA
____________________________________________________________
consensus TCCTCCTAGATTTCCAAGTTGAGGAATCGGAGTATGTGTTTGAGGCGAAAACCATCCAAA
. : . : . : . : . : . :
rJMSF040D01+ GAATGGAGCTTTTAGTACTCTCGAATCTTGAATGGAAGATGAACCCTGTGACTCCATTCT
____________________________________________________________
consensus GAATGGAGCTTTTAGTACTCTCGAATCTTGAATGGAAGATGAACCCTGTGACTCCATTCT
. : . : . : . : . : . :
rJMSF040D01+ CGTTTCTTGATTACATTGCAAGAAGGCTTGAGCTGAAGAGCCATCTCTGTTGTGAATTCC
rJMSF047J21+ TGTTGTGAATTCC
____________________________________________________________
consensus CGTTTCTTGATTACATTGCAAGAAGGCTTGAGCTGAAGAGCCATCTCTGTTGTGAATTCC
. : . : . : . : . : . :
rJMSF040D01+ TTAGGAGATGTGAGGGTGTTCTTCTCTCCATCATTTCTGATTGCAGATTCATGTGTTACC
rJMSF047J21+ TTAGGAGATGTGAGGGTGTTNTTCTCTCCATCA-TTCTGATTGCAGATTCATGTGTTACC
____________________________________________________________
consensus TTAGGAGATGTGAGGGTGTTCTTCTCTCCATCATTTCTGATTGCAGATTCATGTGTTACC
. : . : . : . : . : . :
rJMSF040D01+ TACCCTCTGTAATGGCATCTGCCACAATGCTGCATGTTATTAGCAGGCTAGTGCCC-ACT
rJMSF047J21+ TACCCTCTGTAATGGCATCTGCCACAATGCTGCATGTTATTAGCAGGCTAGTGCCC-ACT
rJMSF003F21+ GCATGTTATTAGCAGGCTAGTGCCC-ACT
rJMFF034C04+ GCATGTTATTAGCAGGCTAGTGCCCNCCT
____________________________________________________________
consensus TACCCTCTGTAATGGCATCTGCCACAATGCTGCATGTTATTAGCAGGCTAGTGCCC-ACT
. : . : . : . : . : . :
rJMSF040D01+ GTTGGTGAAGAGTCCC-AAGAACAACTAATGGGCATTCTTGGAATTGACAAGGTGAAAGT
rJMSF047J21+ GTTGGTGAAGAGTCCC-AAGAACAACTAATGGGCATTCTTGGAATTGACAAGGTGAAAGT
rJMSF003F21+ GTTGGTGAAGAGTCCCAAAGAACAACTAATGGGCATTCTTGGAATTGACAAGGTGAAAGT
rJMFF034C04+ GTTGGTGAAGAGTCCC-AAGAACAANTAATGGGCATTCTTGGAATTGACAAGGTGAAAGT
____________________________________________________________
consensus GTTGGTGAAGAGTCCC-AAGAACAACTAATGGGCATTCTTGGAATTGACAAGGTGAAAGT
. : . : . : . : . : . :
rJMSF040D01+ GGAGGAATGCCAGAAGCTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTA
rJMSF047J21+ GGAGGAATGCCAGAAGCTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTA
rJMSF003F21+ GGAGGAATGCCAGAAGCTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTA
rJMFF034C04+ GGAGGAATGCCAGAAGNTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTA
____________________________________________________________
consensus GGAGGAATGCCAGAAGCTAATCAAGGAAGTAGCATCAAGAATCCAGTTTGAATCAGCTTA
. : . : . : . : . : . :
rJMSF040D01+ TAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAG
rJMSF047J21+ TAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAG
rJMSF003F21+ TAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAG
rJMFF034C04+ TAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAG
____________________________________________________________
consensus TAAAAGGAAGTATGGAGCAATGCCAGGGAGCCCTAAAGGTGTGATGGAAGTGTCATTTAG
. : . : . : . : . : . :
rJMSF040D01+ CTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAA
rJMSF047J21+ CTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAA
rJMSF003F21+ CTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAA
rJMFF034C04+ CTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAA
____________________________________________________________
consensus CTCATCATCATCATCATTATCATCAGACAGCTCCAAAGATTCCTGGGCAGTGTCTGCTAA
. : . : . : . : . : . :
rJMSF040D01+ TGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATT
rJMSF047J21+ TGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATT
rJMSF003F21+ TGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATT
rJMFF034C04+ TGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATT
____________________________________________________________
consensus TGCTTCTTCATCTTCTTCTACCTCTGCAACATCCTCAGTTTCTTCATCCCCAGAGCCATT
. : . : . : . : . : . :
rJMSF040D01+ GTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCC
rJMSF047J21+ GTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCC
rJMSF003F21+ GTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCC
rJMFF034C04+ GTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCC
____________________________________________________________
consensus GTCCAAGAAGACAAGGATGATGTCTCCTCAAGAACATCAAAACTCCCCCACCATCACCCC
. : . : . : . : . : . :
rJMSF040D01+ TCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAA
rJMSF047J21+ TCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAA
rJMSF003F21+ TCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAA
rJMFF034C04+ TCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAA
____________________________________________________________
consensus TCAACATATTATTAATCATTAATCTTGTCCTTAATATTTCCTTAATTTTAGACTAAATAA
. : . : . : . : . : . :
rJMSF040D01+ TAGCTAGGCACCTCATCTCATCAGCT
rJMSF047J21+ TAGCTAGGCACCTCATCTCATCAGCTCCCTGTTCTTGTTTATTTGTTGGTAACATGTTAA
rJMSF003F21+ TAGCTAGGCACCTCATCTCATCAGCTCCCTGTTCTTGTTTATTTGTTGGTAACATGTTAA
rJMFF034C04+ TAGCTAGGCACCTCATCTCATCAGCTCCCTGTTCTTGTTTATTTGTTGGTAACATGTTAA
____________________________________________________________
consensus TAGCTAGGCACCTCATCTCATCAGCTCCCTGTTCTTGTTTATTTGTTGGTAACATGTTAA
. : . : . : . : . : . :
rJMSF047J21+ ATTGCCCACCATCTTTGCACAATTTCAGTCAGTCCAAGCCCCTCTTCAATGGTAGGGTGC
rJMSF003F21+ ATTGCCCACCATCTTTGCACAATTTCAGTCAGTCCAAGCCCCTCTTCAATGGTAGGGTGC
rJMFF034C04+ ATTGCCCACCATCTTTGCACAATTTCAGTCAGTCCAAGCCCCTCTTCAATGGTAGGGTGC
____________________________________________________________
consensus ATTGCCCACCATCTTTGCACAATTTCAGTCAGTCCAAGCCCCTCTTCAATGGTAGGGTGC
. : . : . : . : . : . :
rJMSF047J21+ TACATTATATTATATTTATGATGGGGCATGGAGATT
rJMSF003F21+ TACATTATATTATATTTATGATGGGGCATGGAGATTTGGACCCCCTCCTAGAGGTGGAGA
rJMFF034C04+ TACATTATATTATATTTATGATGGGGCATGGAGATTTGGACCCCCTCCTAGAGGTGGAGA
____________________________________________________________
consensus TACATTATATTATATTTATGATGGGGCATGGAGATTTGGACCCCCTCCTAGAGGTGGAGA
. : . : . : . : . : . :
rJMSF003F21+ TGGTATGCATTTT
rJMFF034C04+ TGGTATGCATTTTTTCCGGAAATATATACCTCAAATATATATATACCATTTCAATAAGAG
____________________________________________________________
consensus TGGTATGCATTTTTTCCGGAAATATATACCTCAAATATATATATACCATTTCAATAAGAG