| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033F18 | Sequence | 599 | 002625 (5) | ref|NP_001274809.1| | 2e-85 | uncharacterized protein LOC102577678 [Solanum tuberosum] gb|ABA46782.1| unknown | 668 | 002625 (5) | ref|XP_009758375.1| | 2e-73 | PREDICTED: RNA-binding protein 8A-like [Nicotiana sylvestris] |
| JMFF038G02 | Sequence | 667 | 002625 (5) | ref|XP_009758375.1| | 2e-74 | PREDICTED: RNA-binding protein 8A-like [Nicotiana sylvestris] | |||||
| JMSF029E03 | Sequence | 614 | 002625 (5) | ref|NP_001274809.1| | 1e-88 | uncharacterized protein LOC102577678 [Solanum tuberosum] gb|ABA46782.1| unknown | 717 | 002625 (5) | ref|NP_001274809.1| | 3e-84 | uncharacterized protein LOC102577678 [Solanum tuberosum] gb|ABA46782.1| unknown |
This contig is upended
. : . : . : . : . : . :
JMFF033F18- GCTGTTTCACCGAATACAAATTGG
JMSF029E03- GGCTGTTTCACCGAATACAAATTGG
____________________________________________________________
consensus GGCTGTTTCACCGAATACAAATTGG
. : . : . : . : . : . :
JMFF033F18- CCTACTGGTCTCCCTCCCTCCCTCCAACTCTCCCACCTTCAAAAAGCCTAGTCAAAGAAG
JMSF029E03- CCTACTGGTCTCCCTCCCTCCCTCCAACTCTCCCACCTTCAAAAAGCCTAGTCAAAGAAG
____________________________________________________________
consensus CCTACTGGTCTCCCTCCCTCCCTCCAACTCTCCCACCTTCAAAAAGCCTAGTCAAAGAAG
. : . : . : . : . : . :
JMFF033F18- GGTAGAACGCAGAACTCAGCAATGGCGAACGCGGCGGAGGTGGAGGCGGTGGACTTCGAG
JMSF029E03- GGTAGAACGCAGAACTCAGCAATGGCGAACGCGGCGGAGGTGGAGGCGGTGGACTTCGAG
rJMSF029E03+ TCGAG
____________________________________________________________
consensus GGTAGAACGCAGAACTCAGCAATGGCGAACGCGGCGGAGGTGGAGGCGGTGGACTTCGAG
. : . : . : . : . : . :
JMFF033F18- CCGGAGGAGGACGATCTGATGGACGAGGATGTCGACGCCTCCTCATCCCCTAGGGCTCCA
JMSF029E03- CCGGAGGAGGACGATCTGATGGACGAGGATGTCGACGCCTCCTCATCCCCTAGGGCTCCA
rJMSF029E03+ CCGGAGGAGGACGATCTGATGGACGAGGATGTCGACGCCTCCTCATCCCCTAGGGCTCCA
rJMFF038G02+ AGGGCTCCA
rJMFF033F18+ GGGCTCCA
____________________________________________________________
consensus CCGGAGGAGGACGATCTGATGGACGAGGATGTCGACGCCTCCTCATCCCCTAGGGCTCCA
. : . : . : . : . : . :
JMFF033F18- ATTCCGAGGATCAAATCCGCTATCGGCGACTCTTCCTCCGCTCCCAAGAAGACTAAGGGC
JMSF029E03- ATTCCGAGGATCAAATCCGCTATCGGCGACTCTTCCTCCGCTCCCAAGAAGACTAAGGGC
rJMSF029E03+ ATTCCGAGGATCAAATCCGCTATCGGCGACTCTTCCTCCGCTCCCAAGAAGACTAAGGGC
rJMFF038G02+ ATTCCGAGGATCAAATCCGCTATCGGCGACTCTTCCTCCGCTCCCAAGAAGACTAAGGGC
rJMFF033F18+ ATTCCGAGGATCAAATCCGCTATCGGCGACTCTTCCTCCGCTCCCAAGAAGACTAAGGGC
____________________________________________________________
consensus ATTCCGAGGATCAAATCCGCTATCGGCGACTCTTCCTCCGCTCCCAAGAAGACTAAGGGC
. : . : . : . : . : . :
JMFF033F18- CGCGGCTTCCGCGAAGACGCTGCCGAGGCTGACCGGAATGCTCGTATGTCTGCTCGCTTC
JMSF029E03- CGCGGCTTCCGCGAAGACGCTGCCGAGGCTGACCGGAATGCTCGTATGTCTGCTCGCTTC
rJMSF029E03+ CGCGGCTTCCGCGAAGACGCTGCCGAGGCTGACCGGAATGCTCGTATGTCTGCTCGCTTC
rJMFF038G02+ CGCGGCTTCCGCGAAGACGCTGCCGAGGCTGACCGGAATGCTCGTATGTCTGCTCGCTTC
rJMFF033F18+ CGCGGCTTCCGCGAAGACGCTGCCGAGGCTGACCGGAATGCTCGTATGTCTGCTCGCTTC
____________________________________________________________
consensus CGCGGCTTCCGCGAAGACGCTGCCGAGGCTGACCGGAATGCTCGTATGTCTGCTCGCTTC
. : . : . : . : . : . :
JMFF033F18- GACTCTCTGGACTCTGACGGTGGCCCCGGTCCTGAACGATCCATTGAAGGATGGATTGTT
JMSF029E03- GACTCTCTGGACTCTGACGGTGGCCCCGGTCCTGAACGATCCATTGAAGGATGGATTGTT
rJMSF029E03+ GACTCTCTGGACTCTGACGGTGGCCCCGGTCCTGAACGATCCATTGAAGGATGGATTGTT
rJMFF038G02+ GACTCTCTGGACTCTGACGGTGGCCCCGGTCCTGAACGATCCATTGAAGGATGGATTGTT
rJMFF033F18+ GACTCTCTGGACTCTGACGGTGGCCCCGGTCCTGAACGATCCATTGAAGGATGGATTGTT
____________________________________________________________
consensus GACTCTCTGGACTCTGACGGTGGCCCCGGTCCTGAACGATCCATTGAAGGATGGATTGTT
. : . : . : . : . : . :
JMFF033F18- TTGGTAACTGGAGTTCATGAAGAGGCTCAAGAAGATGATATCCATAACTCTTTTGGTGAG
JMSF029E03- TTGGTAACTGGAGTTCATGAAGAGGCTCAAGAAGATGATATCCATAACTCTTTTGGTGAG
rJMSF029E03+ TTGGTAACTGGAGTTCATGAAGAGGCTCAAGAAGATGATATCCATAACTCTTTTGGTGAG
rJMFF038G02+ TTGGTAACTGGAGTTCATGAAGAGGCTCAAGAAGATGATATCCATAACTCTTTTGGTGAG
rJMFF033F18+ TTGGTAACTGGAGTTCATGAAGAGGCTCAAGAAGATGATATCCATAACTCTTTTGGTGAG
____________________________________________________________
consensus TTGGTAACTGGAGTTCATGAAGAGGCTCAAGAAGATGATATCCATAACTCTTTTGGTGAG
. : . : . : . : . : . :
JMFF033F18- TTTGGAGATATTAAGAACTTGCATCTGAATCTAGATCGCCGCACTGGGTTTGTCAAGGGT
JMSF029E03- TTTGGAGATATTAAGAACTTGCATCTGAATCTAGATCGCCGCACTGGGTTTGTCAAGGGT
rJMSF029E03+ TTTGGAGATATTAAGAACTTGCATCTGAATCTAGATCGCCGCACTGGGTTTGTCAAGGGT
rJMFF038G02+ TTTGGAGATATTAAGAACTTGCATCTGAATCTAGATCGCCGCACTGGGTTTGTCAAGGGT
rJMFF033F18+ TTTGGAGATATTAAGAACTTGCATCTGAATCTAGATCGCCGCACTGGGTTTGTCAAGGGT
____________________________________________________________
consensus TTTGGAGATATTAAGAACTTGCATCTGAATCTAGATCGCCGCACTGGGTTTGTCAAGGGT
. : . : . : . : . : . :
JMFF033F18- TATGCTCTGGTTGAATATGAGAACTTTGAAGAAGCACAGAAAGCTATAAATGAGATGGAT
JMSF029E03- TATGCTCTGGTTGAATATGAGAACTTTGAAGAAGCACAGAAAGCTATAAATGAGATGGAT
rJMSF029E03+ TATGCTCTGGTTGAATATGAGAACTTTGAAGAAGCACAGAAAGCTATAAATGAGATGGAT
rJMFF038G02+ TATGCTCTGGTTGAATATGAGAACTTTGAAGAAGCACAGAAAGCTATAAATGAGATGGAT
rJMFF033F18+ TATGCTCTGGTTGAATATGAGAACTTTGAAGAAGCACAGAAAGCTATAAATGAGATGGAT
____________________________________________________________
consensus TATGCTCTGGTTGAATATGAGAACTTTGAAGAAGCACAGAAAGCTATAAATGAGATGGAT
. : . : . : . : . : . :
JMFF033F18- GGAACTGAACTGCTCACTCAAATCATTCATGTTGA
JMSF029E03- GGAACTGAACTGCTCACTCAAATCATTCATGTTGATTGGGCATTTAGCA
rJMSF029E03+ GGAACTGAACTGCTCACTCAAATCATTCATGTTGATTGGGCATTTAGCAAAGGTTCATTC
rJMFF038G02+ GGAACTGAACTGCTCACTCAAATCATTCATGTTGATTGGGCATTTAGCAAAGGTTCATTC
rJMFF033F18+ GGAACTGAACTGCTCACTCAAATCATTCATGTTGATTGGGCATTTAGCAAAGGTTCATTC
____________________________________________________________
consensus GGAACTGAACTGCTCACTCAAATCATTCATGTTGATTGGGCATTTAGCAAAGGTTCATTC
. : . : . : . : . : . :
rJMSF029E03+ AAGAGGAGGAATGCAAGGAGATCACCTCGAGGTCATCGTTCAAGAAGTCCAAGGAGGAGA
rJMFF038G02+ AAGAGGAGGAATGCAAGGAGATCACCTCGAGGTCATCGTTCAAGAAGTCCAAGGAGGAGA
rJMFF033F18+ AAGAGGAGGAATGCAAGGAGATCACCTCGAGGTCATCGTTCAAGAAGTCCAAGGAGGAGA
____________________________________________________________
consensus AAGAGGAGGAATGCAAGGAGATCACCTCGAGGTCATCGTTCAAGAAGTCCAAGGAGGAGA
. : . : . : . : . : . :
rJMSF029E03+ TACTAGTTGTGTGAAATGTTTCAAGTAATTGTGGCTAATATTATCGGATTTAGAAACTTG
rJMFF038G02+ TACTAGTTGTGTGAAATGTTTCAAGTAATTGTGGCTAATATTATCGGATTTAGAAACTTG
rJMFF033F18+ TACTAGTTGTGTGAAATGTTTCAAGTAATTGTGGCTAATATTATCGGATTTAGAAACTTG
____________________________________________________________
consensus TACTAGTTGTGTGAAATGTTTCAAGTAATTGTGGCTAATATTATCGGATTTAGAAACTTG
. : . : . : . : . : . :
rJMSF029E03+ ATTTTCGAGGAATGCTGGCTGGTTTAGTGGTGTTGTTATATGTGTATGATGATTACTACA
rJMFF038G02+ ATTTTCGAGGAATGCTGGCTGGTTTAGTGGTGTTGTTATATGTGTATGATGATTACTACA
rJMFF033F18+ ATTTTCGAGGAATGCTGGCTGGTTTAGTGGTGTTGTTATATGTGTATGATGATTACTACA
____________________________________________________________
consensus ATTTTCGAGGAATGCTGGCTGGTTTAGTGGTGTTGTTATATGTGTATGATGATTACTACA
. : . : . : . : . : . :
rJMSF029E03+ CAGAATTTCTTCGGTTCTCCCTTTGGGTTTCCATGAC
rJMFF038G02+ CAGAATTTCTTCGGTTCTCCCTTTGGGTTTCCATGAC
rJMFF033F18+ CAGAATTTCTTCGGTTCTCCCTTTGGGTTTCCATGACTTGCTATTTGAGACTAGTGGTGC
____________________________________________________________
consensus CAGAATTTCTTCGGTTCTCCCTTTGGGTTTCCATGACTTGCTATTTGAGACTAGTGGTGC