Contig 002623:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033A01Sequence591007323 (4)ref|XP_006354937.1|1e-21PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum tube729002623 (3)emb|CDP07604.1|3e-74unnamed protein product [Coffea canephora]
JMSF033B06Sequence439017875768002623 (3)ref|XP_010320362.1|1e-97PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum lyco
JMSF051N22Sequence621007323 (4)ref|XP_006354937.1|3e-23PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum tube683002623 (3)emb|CDP07604.1|3e-69unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF033B06+                                                 TGTCGNAGGGGACTNGTTCTC
                      ____________________________________________________________
consensus                                                    TGTCGNAGGGGACTNGTTCTC
 
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rJMSF033B06+          GAAGCTGTTTAATATCTGCTCGGAGGATGCAAAGGCCGCCTTCACAGCTTTGAGTGTCAG
                      ____________________________________________________________
consensus             GAAGCTGTTTAATATCTGCTCGGAGGATGCAAAGGCCGCCTTCACAGCTTTGAGTGTCAG
 
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rJMSF033B06+          TATTCTGTTTAAGTCTTCTCTGGCAGAGCCAAGGTCCATTCCTTCTGCTTCTATGTACCC
rJMFF033A01+                                                             TATGTACCC
                      ____________________________________________________________
consensus             TATTCTGTTTAAGTCTTCTCTGGCAGAGCCAAGGTCCATTCCTTCTGCTTCTATGTACCC
 
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rJMSF033B06+          TACTCTTGATGTGGGTGATCGCATCATGGCAGAAAAGGTTTCATACGTTTTTAGGGATCC
rJMSF051N22+                   TGTGGGTGATCGCATCATGGCAGAAAAGGTTTCATACGTTTTTAGGGATCC
rJMFF033A01+          TACTCTTGATGTGGGTGATCGCATCATGGCAGAAAAGGTTTCATACGTTTTTAGGGATCC
                      ____________________________________________________________
consensus             TACTCTTGATGTGGGTGATCGCATCATGGCAGAAAAGGTTTCATACGTTTTTAGGGATCC
 
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rJMSF033B06+          TGAAGTTTCAGATATTGTGATATTCAAAGCTCCATATCTCCAGGAGTTTGGTGTTGGTTC
rJMSF051N22+          TGAAGTTTCAGATATTGTGATATTCAAAGCTCCAAATCTCCAGGAGTTTGGTGTTGGTTC
rJMFF033A01+          TGAAGTTTCAGATATTGTGATATTCAAAGCTCCAAATCTCCAGGAGTTTGGTGTTGGTTC
                      ____________________________________________________________
consensus             TGAAGTTTCAGATATTGTGATATTCAAAGCTCCAAATCTCCAGGAGTTTGGTGTTGGTTC
 
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rJMSF033B06+          GGGAGATGTCTTTATAAAACGTGTTGTAGCAATAGCTGGTGATTATGTCGAAGTTCGTGA
rJMSF051N22+          GGGAGATGTCTTTATAAAACGTGTTGTAGCAATAGCTGGTGATTATGTCGAAGTTCGTGA
rJMFF033A01+          GGGAGATGTCTTTATAAAACGTGTTGTAGCAATAGCTGGTGATTATGTCGAAGTTCGTGA
                      ____________________________________________________________
consensus             GGGAGATGTCTTTATAAAACGTGTTGTAGCAATAGCTGGTGATTATGTCGAAGTTCGTGA
 
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rJMSF033B06+          TGGCAAATTGTATGTGAATGACATTGCTGAGGATGAGGAATTCATTCTGGAACCTATTAC
rJMSF051N22+          TGGCAAATTGTATGTGAATGACATTGCTGAGGATGAGGAATTCATTCTGGAACCTATTAC
rJMFF033A01+          TGGCAAATTGTATGTGAATGACATTGCTGAGGATGAGGAATTCATTCTGGAACCTATTAC
                      ____________________________________________________________
consensus             TGGCAAATTGTATGTGAATGACATTGCTGAGGATGAGGAATTCATTCTGGAACCTATTAC
 
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rJMSF033B06+          TTATGAAATGGAACAAATGCTTGTTCCCGAAGGGTGTGTGTTTGTGTTGGGGGACAACCG
rJMSF051N22+          TTATGAAATGGAACAAATGCTTGTTCCCGAAGGGTGTGTGTTTGTGTTGGGGGACAACCG
rJMFF033A01+          TTATGAAATGGAACAAATGCTTGTTCCCGAAGGGTGTGTGTTTGTGTTGGGGGACAACCG
                      ____________________________________________________________
consensus             TTATGAAATGGAACAAATGCTTGTTCCCGAAGGGTGTGTGTTTGTGTTGGGGGACAACCG
 
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rJMSF033B06+          CAACATCAGCCTCGACTCTCATATCTGGGGTCCTCTTCCCATTGAAAACATCATTGGGCG
rJMSF051N22+          CAACATCAGCCTCGACTCTCATATCTGGGGTCCTCTTCCCATTGAAAACATCATTGGGCG
rJMFF033A01+          CAACATCAGCCTCGACTCTCATATCTGGGGTCCTCTTCCCATTGAAAACATCATTGGGCG
                      ____________________________________________________________
consensus             CAACATCAGCCTCGACTCTCATATCTGGGGTCCTCTTCCCATTGAAAACATCATTGGGCG
 
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rJMSF033B06+          CTCAGTTTTCCGGTACTGGCCTCCTTCGAAAGTGTCGAGCACTCTGCATAGCTCACAGAT
rJMSF051N22+          CTCAGTTTTCCGGTACTGGCCTCCTTCGAAAGTGTCGAGCACTCTGCATAGCTCACAGAT
rJMFF033A01+          CTCAGTTTTCCGGTACTGGCCTCCTTCGAAAGTGTCGAGCACTCTGCATAGCTCACAGAT
                      ____________________________________________________________
consensus             CTCAGTTTTCCGGTACTGGCCTCCTTCGAAAGTGTCGAGCACTCTGCATAGCTCACAGAT
 
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rJMSF033B06+          AGAGAGGAAAGATGTGGCCTTTTGTTGACCCTTCCCACTTCCCAGGGCTCTGTGGAGGGA
rJMSF051N22+          AGAGAGGAAAGATGTGGCCTTTTGTTGACCCTTCCCACTTCCCAGGGCTCTGTGGAGGGA
rJMFF033A01+          AGAGAGGAAAGATGTGGCCTTTTGTTGACCCTTCCCACTTCCCAGGGCTCTGTGGAGGGA
                      ____________________________________________________________
consensus             AGAGAGGAAAGATGTGGCCTTTTGTTGACCCTTCCCACTTCCCAGGGCTCTGTGGAGGGA
 
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rJMSF033B06+          AGATCTCTGACGGCTCACTGCATCTCTTGATTCTTTTGTCATCACTTTTCCAGCCCACTC
rJMSF051N22+          AGATCTCTGACGGCTCACTGCATCTCTTGATTCTTTTGTCATCACTTTTCCAGCCCACTC
rJMFF033A01+          AGATCTCTGACGGCTCACTGCATCTCTTGATTCTTTTGTCATCACTTTTCCAGCCCACTC
                      ____________________________________________________________
consensus             AGATCTCTGACGGCTCACTGCATCTCTTGATTCTTTTGTCATCACTTTTCCAGCCCACTC
 
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rJMSF033B06+          GATCTCGCTGGTTTCTTCGGCTGTGAATAGTGAAAACCCTAACCACCCCTGCGTTGGGTG
rJMSF051N22+          GATCTCGCTGGTTTCTTCGGCTGTGAATAGTGAAAACCCTAACCACCCCTGCGTTGGGTG
rJMFF033A01+          GATCTCGCTGGTTTCTTCGGCTGTGAATAGTGAAAACCCTAACCACCCCTGCGTTGGGTG
                      ____________________________________________________________
consensus             GATCTCGCTGGTTTCTTCGGCTGTGAATAGTGAAAACCCTAACCACCCCTGCGTTGGGTG
 
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rJMSF033B06+          AAGCTTTAGGCTATGTTTTGATGGATT                                 
rJMSF051N22+          AAGCTTTAGGCTATGTTTTGATGGATTTATATTGTTCCCATTTGTTGAATCCATTGATGT
rJMFF033A01+          AAGCTTTAGGCTATGTTTTGATGGATTTATATTGTTCCCATTTGTTGAATCCATTGATGT
                      ____________________________________________________________
consensus             AAGCTTTAGGCTATGTTTTGATGGATTTATATTGTTCCCATTTGTTGAATCCATTGATGT
 
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rJMSF051N22+          TTTGTAATTGTTTATGAAAGGCCGATCTT                               
rJMFF033A01+          TTTGTAATTGTTTATGAAAGGCCGATCTTTGGCTAGTTTTTAACTTCTGNTAAAGAGAAA
                      ____________________________________________________________
consensus             TTTGTAATTGTTTATGAAAGGCCGATCTTTGGCTAGTTTTTAACTTCTGNTAAAGAGAAA