| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032L11 | Sequence | 315 | 002622 (5) | ref|XP_004149255.1| | 2e-27 | PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] ref|XP_004165126. | |||||
| JMFF038L06 | Sequence | 523 | 002622 (5) | ref|XP_003611340.1| | 2e-65 | Ribosomal protein L1 [Medicago truncatula] gb|AES94298.1| ribosomal protein L1p/ | 337 | 002622 (5) | ref|XP_002282641.1| | 1e-39 | PREDICTED: 60S ribosomal protein L10a-1 [Vitis vinifera] |
| JMSF039N11 | Sequence | 704 | 002622 (5) | ref|XP_003543429.1| | 2e-123 | PREDICTED: 60S ribosomal protein L10a-1 [Glycine max] gb|ACU16844.1| unknown [Gl | 836 | 002622 (5) | ref|XP_003543429.1| | 4e-129 | PREDICTED: 60S ribosomal protein L10a-1 [Glycine max] gb|ACU16844.1| unknown [Gl |
This contig is upended
. : . : . : . : . : . :
JMSF039N11- GGCTTCGTATACC
____________________________________________________________
consensus GGCTTCGTATACC
. : . : . : . : . : . :
JMFF038L06- CGCCATGAGTAAATTG
JMSF039N11- TCAGGACTTGACTTCAGGTATTTACAAGGGACAGCAAAGTCGTCCGCCATGAGTAAATTG
rJMSF039N11+ CGCCATGAGTAAANTG
____________________________________________________________
consensus TCAGGACTTGACTTCAGGTATTTACAAGGGACAGCAAAGTCGTCCGCCATGAGTAAATTG
. : . : . : . : . : . :
JMFF038L06- CAAAGTGATGCCGTGAGGGAAGCAATCACCCAGATAATGGGGGATTCCAAGGAGAAGAAT
JMSF039N11- CAAAGTGATGCCGTGAGGGAAGCAATCACCCAGATAATGGGGGATTCCAAGGAGAAGAAT
rJMSF039N11+ CAAAGTGATGCCGTGAGGGAAGCAATCACCCAGATAATGGGGGATTCCAAGGAGAAGAAT
____________________________________________________________
consensus CAAAGTGATGCCGTGAGGGAAGCAATCACCCAGATAATGGGGGATTCCAAGGAGAAGAAT
. : . : . : . : . : . :
JMFF038L06- AGAAAATTCACAGAGACTATTGAGCTGCAAATTGGGTTGAAGAATTATGATCCCCAGAAG
JMSF039N11- AGAAAATTCACAGAGACTATTGAGCTGCAAATTGGGTTGAAGAATTATGATCCCCAGAAG
rJMSF039N11+ AGAAAATTCACAGAGACTATTGAGCTGCAAATTGGGTTGAAGAATTATGATCCCCAGAAG
____________________________________________________________
consensus AGAAAATTCACAGAGACTATTGAGCTGCAAATTGGGTTGAAGAATTATGATCCCCAGAAG
. : . : . : . : . : . :
JMFF038L06- GATAAGCGTTTCAGTGGCTCTGTTAAACTACCCCACATTCCCCGCCCTAAGATGAAGATA
rJMFF038L06+ CATTCCCCGCCTTAAGATGAAGATA
JMSF039N11- GATAAGCGTTTCAGTGGCTCTGTTAAACTACCCCACATTCCCCGCCCTAAGATGAAGATA
rJMSF039N11+ GATAAGCGTTTCAGTGGCTCTGTTAAACTACCCCACATTCCCCGCCCTAAGATGAAGATA
____________________________________________________________
consensus GATAAGCGTTTCAGTGGCTCTGTTAAACTACCCCACATTCCCCGCCCTAAGATGAAGATA
. : . : . : . : . : . :
JMFF038L06- TGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCAGAAAAGATTGGAATGGAGTATATG
rJMFF038L06+ TGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCAGAAAAGATTGGAATGGAGTATATG
JMSF039N11- TGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCAGAAAAGATTGGAATGGAGTATATG
rJMSF039N11+ TGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCAGAAAAGATTGGAATGGAGTATATG
____________________________________________________________
consensus TGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCAGAAAAGATTGGAATGGAGTATATG
. : . : . : . : . : . :
JMFF038L06- GATGTG--GAGTTTAAAGAAACTCAACAAGAACAAGAAACTTGTAAAGAAGCTGGCTAAG
rJMFF038L06+ GATGTG--GAGTTTAAAGAAACTCAACAAGANCAAGAANCTTGTAAAGAAGCTGGCTAAG
JMSF039N11- GATGTGGAGAGTTTAAAGAAACTCAACAAGAACAAGAAACTTGTAAAGAAGCTGGCTAAG
rJMSF039N11+ GATGTGGAGAGTTTAAAGAAACTCAACAAGAACAAGAAACTTGTAAAGAAGCTGGCTAAG
____________________________________________________________
consensus GATGTGGAGAGTTTAAAGAAACTCAACAAGAACAAGAAACTTGTAAAGAAGCTGGCTAAG
. : . : . : . : . : . :
JMFF038L06- AAGTACCATGCCTTCTTGGCATCTGAAGCTGTTATTAAACAGATTCCAAGGCTTTTGGGC
rJMFF038L06+ AAGTACCATGCCTTCTTGGCATCTGAAGCTGTTATTAAACAGATTCCAAGGCTTTTGGGC
JMSF039N11- AAGTACCATGCCTTCTTGGCATCTGAAGCTGTTATTAAACAGATTCCAAGGCTTTTGGGC
rJMSF039N11+ AAGTACCATGCCTTCTTGGCATCTGAAGCTGTTATTAAACAGATTCCAAGGCTTTTGGGC
____________________________________________________________
consensus AAGTACCATGCCTTCTTGGCATCTGAAGCTGTTATTAAACAGATTCCAAGGCTTTTGGGC
. : . : . : . : . : . :
JMFF038L06- CCTGGTCTTAACAAGGCAGGTAAGTTTCCAACATTGGTGACACATCAAGAGTCCTTGGAG
rJMFF038L06+ CCTGGTCTTAACAAGGCAGGTAAGTTTCCAACATTGGTGACACATCAAGAGTCCTTGGAG
JMSF039N11- CCTGGTCTTAACAAGGCAGGTAAGTTTCCAACATTGGTGACACATCAAGAGTCCTTGGAG
rJMSF039N11+ CCTGGTCTTAACAAGGCAGGTAAGTTTCCAACATTGGTGACACATCAAGAGTCCTTGGAG
____________________________________________________________
consensus CCTGGTCTTAACAAGGCAGGTAAGTTTCCAACATTGGTGACACATCAAGAGTCCTTGGAG
. : . : . : . : . : . :
JMFF038L06- AACAAGTCCAATGAAACGAAAGCTATGGTGAAATTTCA
rJMFF038L06+ AACAAGTCCAATGAAACGAAAGCTATGGTGAAATTTCAGCTTAAGAAGGTCCTCTGTATG
JMSF039N11- AACAAGTCCAATGAAACGAAAGCTATGGTGAAATTTCAGCTTAAGAAGGTCCTCTGTATG
rJMSF039N11+ AACAAGTCCAATGAAACGAAAGCTATGGTGAAATTTCAGCTTAAGAAGGTCCTCTGTATG
rJMFF032L11+ GGTCCTCTGTATG
____________________________________________________________
consensus AACAAGTCCAATGAAACGAAAGCTATGGTGAAATTTCAGCTTAAGAAGGTCCTCTGTATG
. : . : . : . : . : . :
rJMFF038L06+ GGTGTTGCAGTTGG
JMSF039N11- GGTGTTGCAGTTGGAAATGTGGCAATGGAGGAGAAGCAGGTGTTTCAGAATGTTCAGATG
rJMSF039N11+ GGTGTTGCAGTTGGAAATGTGGCAATGGAGGAGAAGCAGGTGTTTCAGAATGTTCAGATG
rJMFF032L11+ GGGGTTGCAGTTGGAAATGTGGCAATGGAGGAGAAGCAGGTGTTTCAGAATGTTCAGATG
____________________________________________________________
consensus GGTGTTGCAGTTGGAAATGTGGCAATGGAGGAGAAGCAGGTGTTTCAGAATGTTCAGATG
. : . : . : . : . : . :
JMSF039N11- AG
rJMSF039N11+ AGTGTCAACTTCCTTGTCTCGCTGTTGAAGAAAAACTGGCAAAATGTCAGGTGCTTGTAT
rJMFF032L11+ AGTGTCAACTTCCTTGTCTCGCTGTTGAAGAAAAACTGGCAAAATGTCAGGTGCTTGTAT
____________________________________________________________
consensus AGTGTCAACTTCCTTGTCTCGCTGTTGAAGAAAAACTGGCAAAATGTCAGGTGCTTGTAT
. : . : . : . : . : . :
rJMSF039N11+ CTCAAAACAACCATGGGAAGG
rJMFF032L11+ CTCAAAACAACCATGGGAAGGACAGTCCGGATCTTTTGAGTTGGTGCTTTTGTTTTTCTA
____________________________________________________________
consensus CTCAAAACAACCATGGGAAGGACAGTCCGGATCTTTTGAGTTGGTGCTTTTGTTTTTCTA
. : . : . : . : . : . :
rJMFF032L11+ GAGTTCTGTAGGGAGAGCTGAGAATTGGATTTGTCATCTTCTTCTAGTGGTTAAAATCCC
____________________________________________________________
consensus GAGTTCTGTAGGGAGAGCTGAGAATTGGATTTGTCATCTTCTTCTAGTGGTTAAAATCCC
. : . : . : . : . : . :
rJMFF032L11+ TTTTTTGTTTTTCCATTTTCTTGGATTTTCCAGCTTCTGATTATGCAAAACACTGAGATT
____________________________________________________________
consensus TTTTTTGTTTTTCCATTTTCTTGGATTTTCCAGCTTCTGATTATGCAAAACACTGAGATT