Contig 002620:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010G22Sequence604011578 (4)ref|XP_004236182.1|8e-57PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 717002620 (4)gb|KHN19370.1|1e-105Pentatricopeptide repeat-containing protein [Glycine soja]
JMFF032C14Sequence411011578 (4)ref|XP_004236182.1|5e-11PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 648002620 (4)ref|XP_009777760.1|6e-74PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like isoform X
JMFF039C03Sequence417011578 (4)ref|XP_004236182.1|6e-27PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 705002620 (4)ref|XP_009777759.1|5e-102PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like isoform X
JMFS062E05Sequence617002620 (4)gb|KHN19370.1|5e-99Pentatricopeptide repeat-containing protein [Glycine soja]

Alignment

This contig is upended


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JMFS062E05-                                                          TAAAGATGGAGAT
                      ____________________________________________________________
consensus                                                            TAAAGATGGAGAT
 
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JMFS062E05-           AAACCTTGCTTCTCAGCTGCTGCACAGAAGCTCAAACATCATCTGACCTGAAATTTTGTC
rJMFF039C03+                              TGCACAGAAGCTCAAACATCATCTGACCTGAAATTTTGTC
rJMFF010G22+                  CTTCTCAGCTGCTGCACAGAAGCTCAAACATCATCTGACCTGAAATTTTGTC
                      ____________________________________________________________
consensus             AAACCTTGCTTCTCAGCTGCTGCACAGAAGCTCAAACATCATCTGACCTGAAATTTTGTC
 
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JMFS062E05-           GTGAGCTTATGGAAATCACGGGCCACCCAGCTCACGCGTTCTTGAAGACGATGCCATCAG
rJMFF039C03+          GTNAGCTTATGGAAATCACGGGCCACCCAGCTCACGCGTTCTTGAAGACGATGCCATCAG
rJMFF010G22+          GTGAGCTTATGGAAATCACGGGCCACCCAGCTCACGCGTTCTTGAAGACGATGCCATCAG
                      ____________________________________________________________
consensus             GTGAGCTTATGGAAATCACGGGCCACCCAGCTCACGCGTTCTTGAAGACGATGCCATCAG
 
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JMFS062E05-           CGGGGCCTGACGGGCAGAATGTGAGGGATCAC-GTTAGCTGCTTCTTGGACTTAATGCGC
rJMFF039C03+          CGGGGCCTGACGGGCAGAATGTGAGGGATCAC-GTTAGCTGCTTCTTGGACTTAATGCGC
rJMFF010G22+          CGGGGCCTGACGGGCAGAATGTGAGGGATCAC-GTTAGCTGCTTCTTGGACTTAATGCGC
rJMFF032C14+                      GGCAGAATGTGAGGGATCACGGTTAGCTGCTTCTTGGACTTAATGCGC
                      ____________________________________________________________
consensus             CGGGGCCTGACGGGCAGAATGTGAGGGATCAC-GTTAGCTGCTTCTTGGACTTAATGCGC
 
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JMFS062E05-           AGCGAGGACAGGGAGAGCAAGCGGGGGCTTATTGATGCGGTTGTCGATTTCCTCCACAAG
rJMFF039C03+          AGCGAGGACAGGGAGAGCAAGCGGGGGCTTATTGATGCGGTTGTCGATTTCCTCCACAAG
rJMFF010G22+          AGCGAGGACAGGGAGAGCAAGCGGGGGCTTATTGATGCGGTTGTCGATTTCCTCCACAAG
rJMFF032C14+          ANCGAGGACAGGGAGAGCAAGCGGGGGCTTATTGATGCGGTNGTCGATTTCCTCCACAAG
                      ____________________________________________________________
consensus             AGCGAGGACAGGGAGAGCAAGCGGGGGCTTATTGATGCGGTTGTCGATTTCCTCCACAAG
 
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JMFS062E05-           TCGGGGCTCAAGGAGGAAGCCGCATCCGTCTGGGAGGCGGCTGCAGAGAGGAACATCTAC
rJMFF039C03+          TCGGGGCTCAAGGAGGAAGCCGCATCCGTCTGGGAGGCGGCTGCAGAGAGGAACATCTAC
rJMFF010G22+          TCGGGGCTCAAGGAGGAAGCCGCATCCGTCTGGGAGGCGGCTGCAGAGAGGAACATCTAC
rJMFF032C14+          TCGGGGCTCAAGGAGGAAGCCGCATCCGTCTGGGAGGCGGCTGCAGAGAGGAACATCTAC
                      ____________________________________________________________
consensus             TCGGGGCTCAAGGAGGAAGCCGCATCCGTCTGGGAGGCGGCTGCAGAGAGGAACATCTAC
 
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JMFS062E05-           CCGGAGGCTGTACGAGAGAAAGGCTCCCGCTACTGGCTGATAAACCTTCACGTGATGTCT
rJMFF039C03+          CCGGAGGCTGTACGAGAGAAAGGCTCCCGCTACTGGCTGATAAACCTTCACGTGATGTCT
rJMFF010G22+          CCGGAGGCTGTACGAGAGAAAGGCTCCCGCTACTGGCTGATAAACCTTCACGTGATGTCT
rJMFF032C14+          CCGGAGGCTGTNCGAGAGAAAGGCTCCCGCTACTGGCTGATAAACCTTCACGTGATGTCT
                      ____________________________________________________________
consensus             CCGGAGGCTGTACGAGAGAAAGGCTCCCGCTACTGGCTGATAAACCTTCACGTGATGTCT
 
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JMFS062E05-           GATGGGACCGCTGTCACGGCTCTGTCGAGGACGCTAGCCTCGTTCCGCAAGCACATGCTT
rJMFF039C03+          GATGGGACCGCTGTCACGGCTCTGTCGAGGACGCTAGCCTCGTTCCGCAAGCACATGCTT
rJMFF010G22+          GATGGGACCGCTGTCACGGCTCTGTCGAGGACGCTAGCCTCGTTCCGCAAGCACATGCTT
rJMFF032C14+          GATGGGACCGCTGTCACGGCTCTGTCGAGGACGCTAGCCTCGTTCCGCAAGCACATGCTT
                      ____________________________________________________________
consensus             GATGGGACCGCTGTCACGGCTCTGTCGAGGACGCTAGCCTCGTTCCGCAAGCACATGCTT
 
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JMFS062E05-           TCGTCTGGAGTTTGCCCCAACCGGATCGATATCGTGACTGGGTGGGGCCGGAGGAGTCGG
rJMFF039C03+          TCGTCTGGAGTTTGCCCCAACCGGATCGATATCGTGACTGGGTGGGGCCGGAGGAGTCGG
rJMFF010G22+          TCGTCTGGAGTTTGCCCCAACCGGATCGATATCGTGACTGGGTGGGGCCGGAGGAGTCGG
rJMFF032C14+          TCGTCTGGAGTTTGCCCCAACCGGATCGATATCGTGACTGGGTGGGGCCGGAGGAGTCGG
                      ____________________________________________________________
consensus             TCGTCTGGAGTTTGCCCCAACCGGATCGATATCGTGACTGGGTGGGGCCGGAGGAGTCGG
 
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JMFS062E05-           GTGACAGGCACGTCTCTTGTGAGGCAAACCATACAGGAGGTGCTCAGCATGCTCAACTCC
rJMFF039C03+          GTGACAGGCACGTCTCTTGTGAGGCAAACCATACAGGAGGTGCTCAGCATGCTCAACTCC
rJMFF010G22+          GTGACAGGCACGTCTCTTGTGAGGCAAACCATACAGGAGGTGCTCAGCATGCTCAACTCC
rJMFF032C14+          GTGACAGGCACGTCTCTTGTGAGGCAAACCATACAGGAGGTGCTCAGCATGCTCAACTCC
                      ____________________________________________________________
consensus             GTGACAGGCACGTCTCTTGTGAGGCAAACCATACAGGAGGTGCTCAGCATGCTCAACTCC
 
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JMFS062E05-           CCCTTTCTTCCTGTTAATGGTAACTCTGGGTGTTTTGTAGGGCGTGGAGAATCTCTCAGT
rJMFF039C03+          CCCTTTCTTCCTGTTAATGGTAACTCTGGGTGTTTTGTAGGGCGTGGAGAATCTCTCAGT
rJMFF010G22+          CCCTTTCTTCCTGTTAATGGTAACTCTGGGTGTTTTGTAGGGCGTGGAGAATCTCTCAGT
rJMFF032C14+          CCCTTTCTTCCTGTTAATGGTAACTCTGGGTGTTTTGTAGGGCGTGGAGAATCTCTCAGT
                      ____________________________________________________________
consensus             CCCTTTCTTCCTGTTAATGGTAACTCTGGGTGTTTTGTAGGGCGTGGAGAATCTCTCAGT
 
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JMFS062E05-           AAATG                                                       
rJMFF039C03+          AAATGGTTGGTCCAACCTTACGTTGAACGGATGCATTTGCTGTAGTTATCATGTAAAGAT
rJMFF010G22+          AAATGGTTGGTCCAACCTTACGTTGAACGGATGCATTTGCTGTAGTTATCATGTAAAGAT
rJMFF032C14+          AAATGGTTGGTCCAACCTTACGTTGAACGGATGCATTTGCTGTAGTTATCATGTAAAGAT
                      ____________________________________________________________
consensus             AAATGGTTGGTCCAACCTTACGTTGAACGGATGCATTTGCTGTAGTTATCATGTAAAGAT
 
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rJMFF039C03+          TCTTGTATTCGGATTTCCTAAGGAATCAGTGTGCTAACTTGTATGAGCGTTCAGTGTAAT
rJMFF010G22+          TCTTGTATTCGGATTTCCTAAGGAATCAGTGTGCTAACTTGTATGAGCGTTCAGTGTAAT
rJMFF032C14+          TCTTGTATTCGGATTTCCTAAGGAATCAGTGTGCTAACTTGTATGAGCGTTCAGTGTAAT
                      ____________________________________________________________
consensus             TCTTGTATTCGGATTTCCTAAGGAATCAGTGTGCTAACTTGTATGAGCGTTCAGTGTAAT
 
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rJMFF039C03+          ATTACT                                                      
rJMFF010G22+          ATTACT                                                      
rJMFF032C14+          ATTACTTGGTTTTCTTTCTTTTCTGAGTTGCCAAATGATGGATCTTAGCGCTGCATTATG
                      ____________________________________________________________
consensus             ATTACTTGGTTTTCTTTCTTTTCTGAGTTGCCAAATGATGGATCTTAGCGCTGCATTATG