| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008F18 | Sequence | 548 | 007416 (5) | ref|XP_009610396.1| | 2e-59 | PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment | 728 | 002618 (4) | gb|KDP46484.1| | 4e-49 | hypothetical protein JCGZ_08456 [Jatropha curcas] |
| JMFF031O21 | Sequence | 583 | 007416 (5) | ref|XP_009610396.1| | 2e-59 | PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment | 709 | 002618 (4) | gb|KDP46484.1| | 2e-48 | hypothetical protein JCGZ_08456 [Jatropha curcas] |
| JMSF013P04 | Sequence | 497 | 007416 (5) | ref|XP_009610396.1| | 6e-51 | PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment | 668 | 002618 (4) | gb|KDP46484.1| | 1e-46 | hypothetical protein JCGZ_08456 [Jatropha curcas] |
| JMSF045O19 | Sequence | 623 | 007416 (5) | ref|XP_009795435.1| | 8e-63 | PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X2 [Nicot | 637 | 002618 (4) | ref|XP_007016084.1| | 1e-44 | Zinc finger family protein [Theobroma cacao] gb|EOY33703.1| Zinc finger family p |
This contig is upended
. : . : . : . : . : . :
rJMFF008F18+ TCCCTCACC
____________________________________________________________
consensus TCCCTCACC
. : . : . : . : . : . :
rJMSF013P04+ GTCGTTTAGGATGGATCCATCTGATTCAGCCTCATCAGCAG
rJMFF008F18+ ATCCCCCAGCTAGAACATCGTCGTTTAGGATGGATCCATCTGATTCAGCCTCATCAGCAG
rJMSF045O19+ TCATCAGCAG
rJMFF031O21+ TAGAACATCGTCGTTTAGGATGGATCCATCTGATTCAGCNTCATCAGCAG
____________________________________________________________
consensus ATCCCCCAGCTAGAACATCGTCGTTTAGGATGGATCCATCTGATTCAGCCTCATCAGCAG
. : . : . : . : . : . :
rJMSF013P04+ TGTTGAATTCAAGATCTGCTGCATTTGCAAAACGAAGCCACAGTTTTGTTGATCGCAGTG
rJMFF008F18+ TGTTGAATTCAAGATCTGCTGCATTTGCAAAACGAAGCCACAGTTTTGTTGATCGCAGTG
rJMSF045O19+ TGTTGAATTCAAGATCTGCTGCATTTGCAAAACGAAGCCACAGTTTTGTTGATCGCAGTG
rJMFF031O21+ TGTTGAATTCAAGATCTGCTGCATTTGCAAAACGAAGCCACAGTTTTGTTGATCGCAGTG
____________________________________________________________
consensus TGTTGAATTCAAGATCTGCTGCATTTGCAAAACGAAGCCACAGTTTTGTTGATCGCAGTG
. : . : . : . : . : . :
rJMSF013P04+ TGGCATCTTCGCCAACCTCTCCTGCAATTGCAATGCCATCAACCCTTTCCGGTTGGGGCT
rJMFF008F18+ TGGCATCTTCGCCAACCTCTCCTGCAATTGCAATGCCATCAACCCTTTCCGGTTGGGGCT
rJMSF045O19+ TGGCATCTCCGCCAACCTCTCCTGCAATTGCAATGCCATCAACCCTTTCCGGTTGGGGCT
rJMFF031O21+ TGGCATCTTCGCCAACCTCTCCTGCAATTGCAATGCCATCAACCCTTTCCGGTTGGGGCT
____________________________________________________________
consensus TGGCATCTTCGCCAACCTCTCCTGCAATTGCAATGCCATCAACCCTTTCCGGTTGGGGCT
. : . : . : . : . : . :
rJMSF013P04+ CTCCCGATGGAAAATTAGACTGGGGTATCAAGAAGGAGGAGCTCAGTAAGTTTAGGAAAT
rJMFF008F18+ CTCCCGATGGAAAATTAGACTGGGGTATCAAGAAGGAGGAGCTCAGTAAGTTTAGGAAAT
rJMSF045O19+ CTCCCGATGGAAAATTAGACTGGGGTATCAAGAAGGAGGAGCTCAGTAAGTTTAGGAAAT
rJMFF031O21+ CTCCCGATGGAAAATTAGACTGGGGTATCAAGAAGGAGGAGCTCAGTAAGTTTAGGAAAT
____________________________________________________________
consensus CTCCCGATGGAAAATTAGACTGGGGTATCAAGAAGGAGGAGCTCAGTAAGTTTAGGAAAT
. : . : . : . : . : . :
rJMSF013P04+ CGGCTTCGTTTGGCATCAGGAGCAGTGGCAACAATCTTGCAATGGATGGCACCTCGCTTT
rJMFF008F18+ CGGCTTCGTTTGGCATCAGGAGCAGTGGCAACAATCTTGCAATGGATGGCACCTCGCTTT
rJMSF045O19+ CGGCTTCGTTTGGCATCAGGAGCAGTGGCAACAATCTTGCAATGGATGGCACCTCGCTTT
rJMFF031O21+ CGGCTTCGTTTGGCATCAGGAGCAGTGGCAACAATCTTGCAATGGATGGCACCTCGCTTT
____________________________________________________________
consensus CGGCTTCGTTTGGCATCAGGAGCAGTGGCAACAATCTTGCAATGGATGGCACCTCGCTTT
. : . : . : . : . : . :
rJMSF013P04+ CAACCACTGCTGTCGAGCCTAATGCTTTGTGGGTTCAATCTTTAGTAAATCATGGCCAAT
rJMFF008F18+ CAACCACTGCTGTCGAGCCTAATGCTTTGTGGGTTCAATCTTTAGTAAATCATGGCCAAT
rJMSF045O19+ CAACCACTGCTGTCGAGCCTAATGCTTTGTGGGTTCAATCTTTAGTAAATCATGGCCAAT
rJMFF031O21+ CAACCACTGCTGTCGAGCCTAATGCTTTGTGGGTTCAATCTTTAGTAAATCATGGCCAAT
____________________________________________________________
consensus CAACCACTGCTGTCGAGCCTAATGCTTTGTGGGTTCAATCTTTAGTAAATCATGGCCAAT
. : . : . : . : . : . :
rJMSF013P04+ TCAGTATGGAAGATCAGCAGTATTGTCTGAACAACAGAGGAGGTTCAGAGATGCATCCAT
rJMFF008F18+ TCAGTATGGAAGATCAGCAGTATTGTCTGAACAACAGAGGAGGTTCAGAGATGCATCCAT
rJMSF045O19+ TCAGTATGGAAGATCAGCAGTATTGTCTGAACAACAGAGGAGGTTCAGAGATGCATCCAT
rJMFF031O21+ TCAGTATGGAAGATCAGCAGTATTGTCTGAACAACAGAGGAGGTTCAGAGATGCATCCAT
____________________________________________________________
consensus TCAGTATGGAAGATCAGCAGTATTGTCTGAACAACAGAGGAGGTTCAGAGATGCATCCAT
. : . : . : . : . : . :
rJMSF013P04+ CATGGGCGGACCAGTTATATATGGACCAGGAGCAGATTGTGGCATAAACATGACATTAAC
rJMFF008F18+ CATGGGCGGACCAGTTATATATGGACCAGGAGCAGATTGTGGCATAAACATGACATTAAC
rJMSF045O19+ CATGGGCGGACCAGTTATATATGGACCAGGAGCAGATTGTGGCATAAACATGACATTAAC
rJMFF031O21+ CATGGGCGGACCAGTTATATATGGACCAGGAGCAGATTGTGGCATAAACATGACATTAAC
____________________________________________________________
consensus CATGGGCGGACCAGTTATATATGGACCAGGAGCAGATTGTGGCATAAACATGACATTAAC
. : . : . : . : . : . :
rJMSF013P04+ TCCAAAGTCAGAATCTTTCGGGTAATCTTTAACAAGTTCTTTGTCATTTTTTGAATTTTT
rJMFF008F18+ TCCAAAGTCAGAATCTTTCGGGTAATCTTTAACAAGTTCTTTGTCATTTTTTGAATTTTT
rJMSF045O19+ TCCAAAGTCAGAATCTTTCGGGTAATCTTTAACAAGTTCTTTGTCATTTTTTGAATTTTT
rJMFF031O21+ TCCAAAGTCAGAATCTTTCGGGTAATCTTTAACAAGTTCTTTGTCATTTTTTGAATTTTT
____________________________________________________________
consensus TCCAAAGTCAGAATCTTTCGGGTAATCTTTAACAAGTTCTTTGTCATTTTTTGAATTTTT
. : . : . : . : . : . :
rJMSF013P04+ GCTCAAATTCAACGATGGATACATGAAAATAGAACATAGAGAAAACAAGAAGTTGGGCAG
rJMFF008F18+ GCTCAAATTCAACGATGGATACATGAAAATAGAACATAGAGAAAACAAGAAGTTGGGCAG
rJMSF045O19+ GCTCAAATTCAACGATGGATACATGAAAATAGAACATAGAGAAAACAAGAAGTTGGGCAG
rJMFF031O21+ GCTCAAATTCAACGATGGATACATGAAAATAGAACATAGAGAAAACAAGAAGTTGGGCAG
____________________________________________________________
consensus GCTCAAATTCAACGATGGATACATGAAAATAGAACATAGAGAAAACAAGAAGTTGGGCAG
. : . : . : . : . : . :
rJMSF013P04+ GGTAAAAAAAATCAATCTTTCCCTTCTTCCCCTTTCAATTATGTTGAAACCTTGAAATAC
rJMFF008F18+ GGTAAAAAAAATCAATCTTTCCCTTCTTCCCCTTTCAATTATGTTGAAA-CTTGAAATAC
rJMSF045O19+ GGTAAAAAAAATCAATCTTTCCCTTCTTCCCCTTTCAATTATGTTGAAA-CTTGAAATAC
rJMFF031O21+ GGTAAAAAAAATCAATCTTTCCCTTCTTCCCCTTTCAATTATGTTGAAA-CTTGAAATAC
____________________________________________________________
consensus GGTAAAAAAAATCAATCTTTCCCTTCTTCCCCTTTCAATTATGTTGAAA-CTTGAAATAC
. : . : . : . : . : . :
rJMSF013P04+ TTATCATCCCTCCTAGTATACAAATTT
rJMFF008F18+ TTATCATCCCTCCTAGTATACAAATTTGTATTCTATTATAAATGTACCAGATAATAAAAG
rJMSF045O19+ TTATCATCCCTCCTAGTATACAAATTT
rJMFF031O21+ TTATCATCCCTCCTAGTATACAAATTTGTATTCTATTATAAATGTACCAGATAATAAAAG
____________________________________________________________
consensus TTATCATCCCTCCTAGTATACAAATTTGTATTCTATTATAAATGTACCAGATAATAAAAG