Contig 002617:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029M05Sequence533006740 (4)ref|XP_006363022.1|2e-09PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]745002617 (4)gb|KDP29900.1|5e-115hypothetical protein JCGZ_18469 [Jatropha curcas]
JMFF031H17Sequence522006740 (4)ref|XP_006363022.1|3e-05PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]759002617 (4)gb|KDP29900.1|8e-88hypothetical protein JCGZ_18469 [Jatropha curcas]
JMSF047F22Sequence691006740 (4)ref|XP_009761823.1|7e-39PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref|721002617 (4)gb|KDP29900.1|4e-115hypothetical protein JCGZ_18469 [Jatropha curcas]
JMSF050I19Sequence712006740 (4)ref|XP_007215518.1|4e-31hypothetical protein PRUPE_ppa003702mg [Prunus persica] gb|EMJ16717.1| hypotheti777002617 (4)gb|KDP29900.1|6e-114hypothetical protein JCGZ_18469 [Jatropha curcas]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+                             TGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
rJMFF029M05+                          CCATGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
rJMSF050I19+                             TGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
                      ____________________________________________________________
consensus                             CCATGTCAGACTATGAAGTTAAGGTATCCGACTTGGGAATTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
rJMFF029M05+          ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
rJMSF050I19+          ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
                      ____________________________________________________________
consensus             ACCGGTGAAGCACTGGCTGTGAATTTCGCGTTCATGCTGCACCACATGCCAGACGAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
rJMFF029M05+          GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
rJMSF050I19+          GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
rJMFF031H17+                               GACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCNTAAG
                      ____________________________________________________________
consensus             GTGAGCACACTTAACCACCGGGACCAGCTACTAAGGCTCGTGAAAAGCCTGAATCCTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
rJMFF029M05+          GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
rJMSF050I19+          GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
rJMFF031H17+          GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
                      ____________________________________________________________
consensus             GTGGTTACCCTCGTCGAGCAAGAATGCAATACAAACACTGCTCCTTTCTTCCCCCGGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
rJMFF029M05+          CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
rJMSF050I19+          CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
rJMFF031H17+          CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
                      ____________________________________________________________
consensus             CTCGAAACCTTAGACTACTACATCGCAATGTTTGAGTCAATCGATGTCAATCTTCCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
rJMFF029M05+          GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
rJMSF050I19+          GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
rJMFF031H17+          GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
                      ____________________________________________________________
consensus             GAGCACAAAGAACGGATAAATGTCGAGCAGCATTGCCTGGCAAGAGATGTTGTCAACATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
rJMFF029M05+          ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
rJMSF050I19+          ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
rJMFF031H17+          ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
                      ____________________________________________________________
consensus             ATAGCGTGCGAGGGAACAGAAAGGGTGGAGAGGCATGAGCTTCTGGGGAAGTGGAAGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
rJMFF029M05+          CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
rJMSF050I19+          CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
rJMFF031H17+          CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
                      ____________________________________________________________
consensus             CGGTTCAGGATGGCCGGGTTTTCTCCGTACCCATTGAGTTCTTTGGTGAATGCCACGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
rJMFF029M05+          AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
rJMSF050I19+          AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
rJMFF031H17+          AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
                      ____________________________________________________________
consensus             AAGACTCTGTTAGGAAACTATTCTAGCAAATACAGGCTTGAAGAAAGAGATGGAGCCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
rJMFF029M05+          TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
rJMSF050I19+          TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
rJMFF031H17+          TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
                      ____________________________________________________________
consensus             TATCTTGGTTGGATGAAGAGAGATTTGGTTGCTTCCTGTGCATGGAAGTGAAAGCCACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
rJMFF029M05+          GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
rJMSF050I19+          GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
rJMFF031H17+          GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
                      ____________________________________________________________
consensus             GGCTGCAGAAGAACATCATCATACTTAGATGTAACCTTAGTTGTCTCAGCGTTTCCTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
rJMFF029M05+          TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
rJMSF050I19+          TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
rJMFF031H17+          TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
                      ____________________________________________________________
consensus             TTTATGTTTTTTTCTAATCTTCTGCAGTGGCTGTAGTAAATTTACTGTTCCATTAATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047F22+          TCAATGATTATTGGCTCAG                                         
rJMFF029M05+          TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTA                   
rJMSF050I19+          TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTAATTCCCAGTGAAAGGACTG
rJMFF031H17+          TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTAATTCCCAGTGAAAGGACTG
                      ____________________________________________________________
consensus             TCAATGATTATTGGCTCAGTAACCACAAGGTTTTAAGTTTAATTCCCAGTGAAAGGACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I19+          ACTTATTGGTCTTCTT                                            
rJMFF031H17+          ACTTATTGGTCTTCTTGGTTTGAGCTAGTCAGCTATGTTCAACTTAGCCTGGTTTATCTC
                      ____________________________________________________________
consensus             ACTTATTGGTCTTCTTGGTTTGAGCTAGTCAGCTATGTTCAACTTAGCCTGGTTTATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031H17+          TTTGCAGTCCTTTGTCGGCTAAAGGGGGAAGTTATGAGTTTCTCTCGTCATAAAAAAAGC
                      ____________________________________________________________
consensus             TTTGCAGTCCTTTGTCGGCTAAAGGGGGAAGTTATGAGTTTCTCTCGTCATAAAAAAAGC