Contig 002614:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF009A03+                                                                    GA
                      ____________________________________________________________
consensus                                                                       GA
 
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rJMSF009A03+          GAAAAATCGGAAACTGAATGACTTGCTTGATGCTCTGGACTTTAATCAAGTTGTTATCTT
rJMSF018I08+                                                     AATCAAGTTGTTATCTT
                      ____________________________________________________________
consensus             GAAAAATCGGAAACTGAATGACTTGCTTGATGCTCTGGACTTTAATCAAGTTGTTATCTT
 
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rJMSF009A03+          TGTCAAAAGTGTGAATAGGGCTGCTGAGCTAAACAAGTTACTTGTTGAATGTAATTTTCC
rJMSF018I08+          NGTCAAAAGTGTGAATAGGGCTGCTGAGCTAAACAAGTTACTTGTTGAATGTAATTTTCC
                      ____________________________________________________________
consensus             TGTCAAAAGTGTGAATAGGGCTGCTGAGCTAAACAAGTTACTTGTTGAATGTAATTTTCC
 
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rJMSF009A03+          ATCAATCTGCATCCACTCTGGCATGTCTCAGGAAGAGAGACTGACACGTTACAAGGGTTT
rJMSF018I08+          ATCAATCTGCATCCACTCTGGCATGTCTCAGGAAGAGAGACTGACACGTTACAAGGGTTT
rJMFF030G21+                                            GAGAGACTGACACGTTACAAGGGTTT
                      ____________________________________________________________
consensus             ATCAATCTGCATCCACTCTGGCATGTCTCAGGAAGAGAGACTGACACGTTACAAGGGTTT
 
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rJMSF009A03+          CAAGGAGGGGCACAAGAGAATTCTTGTTGCTACTGATTTGGTTGGCAGGGGCATTGATAT
rJMSF018I08+          CAAGGAGGGGCACAAGAGAATTCTTGTTGCTACTGATTTGGTTGGCAGGGGCATTGATAT
rJMFF030G21+          CAAGGAGGGGCACAAGAGAATTCTTGTTGCTACTGATTTGGTTGGCAGGGGCATTGATAT
                      ____________________________________________________________
consensus             CAAGGAGGGGCACAAGAGAATTCTTGTTGCTACTGATTTGGTTGGCAGGGGCATTGATAT
 
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rJMSF009A03+          TGAACGGGTTAACATTGTCATTAACTATGACATGCCCGACTCTGCTGACACTTACCTTCA
rJMSF018I08+          TGAACGGGTTAACATTGTCATTAACTATGACATGCCCGACTCTGCTGACACTTACCTTCA
rJMFF030G21+          TGAACGGGTTAACATTGTCATTAACTATGACATGCCCGACTCTGCTGACACTTACCTTCA
                      ____________________________________________________________
consensus             TGAACGGGTTAACATTGTCATTAACTATGACATGCCCGACTCTGCTGACACTTACCTTCA
 
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rJMSF009A03+          CAGGGTGGGTCGAGCTGGTCGGTTTGGCACTAAGGGTCTTGCTATAACTTTTGTTTCATC
rJMSF018I08+          CAGGGTGGGTCGAGCTGGTCGGTTTGGCACTAAGGGTCTTGCTATAACTTTTGTTTCATC
rJMFF030G21+          CAGGGTGGGTCGAGCTGGTCGGTTTGGCACTAAGGGTCTTGCTATAACTTTTGTTTCATC
                      ____________________________________________________________
consensus             CAGGGTGGGTCGAGCTGGTCGGTTTGGCACTAAGGGTCTTGCTATAACTTTTGTTTCATC
 
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rJMSF009A03+          ATCATCAGATTCAGATGTACTGAATCAGGTTCAGGAAAGGTTCGAAGTTGATATCAAAGA
rJMSF018I08+          ATCATCAGATTCAGATGTACTGAATCAGGTTCAGGAAAGGTTCGAAGTTGATATCAAAGA
rJMFF030G21+          ATCATCAGATTCAGATGTACTGAATCAGGTTCAGGAAAGGTTCGAAGTTGATATCAAAGA
                      ____________________________________________________________
consensus             ATCATCAGATTCAGATGTACTGAATCAGGTTCAGGAAAGGTTCGAAGTTGATATCAAAGA
 
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rJMSF009A03+          GCTACCTGAGCAGATCGATACTTCTACTTATATGCCATCGTAATGAAATGGGGCGCAGTT
rJMSF018I08+          GCTACCTGAGCAGATCGATACTTCTACTTATATGCCATCGTAATGAAATGGGGCGCAGTT
rJMFF030G21+          GCTACCTGAGCAGATCGATACTTCTACTTATATGCCATCGTAATGAAATGGGGCGCAGTT
                      ____________________________________________________________
consensus             GCTACCTGAGCAGATCGATACTTCTACTTATATGCCATCGTAATGAAATGGGGCGCAGTT
 
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rJMSF009A03+          GCCTTCAAGAATTGTGAGTGATGAGCAAATAGTTTGCAAGGAGAGAAGTAATTCCTGGCT
rJMSF018I08+          GCCTTCAAGAATTGTGAGTGATGAGCAAATAGTTTGCAAGGAGAGAAGTAATTCCTGGCT
rJMFF030G21+          GCCTTCAAGAATTGTGAGTGATGAGCAAATAGTTTGCAAGGAGAGAAGTAATTCCTGGCT
                      ____________________________________________________________
consensus             GCCTTCAAGAATTGTGAGTGATGAGCAAATAGTTTGCAAGGAGAGAAGTAATTCCTGGCT
 
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rJMSF009A03+          CGCGTGTTTTCATCTATATGCTATCGAATGTTTTGTACCATTTATGAAGACGTAGTGTTT
rJMSF018I08+          CGCGTGTTTTCATCTATATGCTATCGAATGTTTTGTACCATTTATGAAGACGTAGTGTTT
rJMFF030G21+          CGCGTGTTTTCATCTATATGCTATCGAATGTTTTGTACCATTTATGAAGACGTAGTGTTT
                      ____________________________________________________________
consensus             CGCGTGTTTTCATCTATATGCTATCGAATGTTTTGTACCATTTATGAAGACGTAGTGTTT
 
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rJMSF009A03+          ACCTGCCTACCACATCATCGCATAGATCTAGGTTTATATTCCTGACTAGCTTTACCTGAC
rJMSF018I08+          ACCTGCCTACCACATCATCGCATAGATCTAGGTTTATATTCCTGACTAGCTTTACCTGAC
rJMFF030G21+          ACCTGCCTACCACATCATCGCATAGATCTAGGTTTATATTCCTGACTAGCTTTACCTGAC
                      ____________________________________________________________
consensus             ACCTGCCTACCACATCATCGCATAGATCTAGGTTTATATTCCTGACTAGCTTTACCTGAC
 
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rJMSF009A03+          ATTATATTTATCAGTTTTCTAGATGTCAGCTAAATATTTTGGGTAATAGATTTTTTTGAG
rJMSF018I08+          ATTATATTTATCAGTTTTCTAGATGTCAGCTAAATATTTTGGGTAATAGATTTTTTTGAG
rJMFF030G21+          ATTATATTTATCAGTTTTCTAGATGTCAGCTAAATATTTTGGGTAATAGATTTTTTTGAG
                      ____________________________________________________________
consensus             ATTATATTTATCAGTTTTCTAGATGTCAGCTAAATATTTTGGGTAATAGATTTTTTTGAG
 
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rJMSF009A03+          GTCAGTACCAAATAGATTGTTGGTGATGTAATATGTAT                      
rJMSF018I08+          GTCAGTACCAAATAGATTGTTGGTGATGTAATATGTATGGTTCAAAGTAGACGACCTA  
rJMFF030G21+          GTCAGTACCAAATAGATTGTTGGTGATGTAATATGTATGGTTCAAAGTAGACGACCTAAC
                      ____________________________________________________________
consensus             GTCAGTACCAAATAGATTGTTGGTGATGTAATATGTATGGTTCAAAGTAGACGACCTAAC