Contig 002613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J11Sequence442006001 (3)ref|XP_010323878.1|1e-41PREDICTED: protein DGCR14 [Solanum lycopersicum]743002613 (3)ref|XP_006363025.1|1e-121PREDICTED: protein DGCR14-like [Solanum tuberosum]
JMFF029B18Sequence578006001 (3)ref|XP_009762150.1|7e-60PREDICTED: protein DGCR14 [Nicotiana sylvestris]722002613 (3)ref|XP_006363025.1|4e-88PREDICTED: protein DGCR14-like [Solanum tuberosum]
JMFF030C06Sequence567006001 (3)ref|XP_009762150.1|2e-58PREDICTED: protein DGCR14 [Nicotiana sylvestris]673002613 (3)ref|XP_006363025.1|8e-106PREDICTED: protein DGCR14-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF029B18+                                                        TTTCCTTGATAGAA
rJMFF014J11+                                   TCCTGGAGCTACACNTATTCCTTTCCTTGATAGAA
                      ____________________________________________________________
consensus                                      TCCTGGAGCTACACNTATTCCTTTCCTTGATAGAA
 
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rJMFF029B18+          GTGGGGACAAGGCGAAGAAATATGATCTGGAGGACCTGAGGAAGACACCAAATCAGTTTT
rJMFF014J11+          GTGGGGACAAGGCGAAGAAATATGATCTGGAGGACCTGAGGAAGACACCAAATCAGTTTT
rJMFF030C06+                                                        ACCAAATCAGTTTT
                      ____________________________________________________________
consensus             GTGGGGACAAGGCGAAGAAATATGATCTGGAGGACCTGAGGAAGACACCAAATCAGTTTT
 
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rJMFF029B18+          ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTTCCCCCT
rJMFF014J11+          ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTT-CCCCT
rJMFF030C06+          ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTT-CCCCT
                      ____________________________________________________________
consensus             ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTT-CCCCT
 
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rJMFF029B18+          GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
rJMFF014J11+          GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
rJMFF030C06+          GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
                      ____________________________________________________________
consensus             GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
 
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rJMFF029B18+          AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
rJMFF014J11+          AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
rJMFF030C06+          AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
                      ____________________________________________________________
consensus             AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
 
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rJMFF029B18+          AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
rJMFF014J11+          AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
rJMFF030C06+          AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
                      ____________________________________________________________
consensus             AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
 
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rJMFF029B18+          CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
rJMFF014J11+          CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
rJMFF030C06+          CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
                      ____________________________________________________________
consensus             CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
 
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rJMFF029B18+          GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
rJMFF014J11+          GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
rJMFF030C06+          GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
                      ____________________________________________________________
consensus             GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
 
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rJMFF029B18+          AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
rJMFF014J11+          AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
rJMFF030C06+          AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
                      ____________________________________________________________
consensus             AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
 
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rJMFF029B18+          TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
rJMFF014J11+          TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
rJMFF030C06+          TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
                      ____________________________________________________________
consensus             TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
 
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rJMFF029B18+          AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
rJMFF014J11+          AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
rJMFF030C06+          AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
                      ____________________________________________________________
consensus             AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
 
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rJMFF029B18+          TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
rJMFF014J11+          TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
rJMFF030C06+          TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
                      ____________________________________________________________
consensus             TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
 
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rJMFF029B18+          CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAA            
rJMFF014J11+          CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAA            
rJMFF030C06+          CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAAAAGTTGTATTGA
                      ____________________________________________________________
consensus             CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAAAAGTTGTATTGA