Contig 002612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M13Sequence126010220 (2)721002612 (2)ref|XP_009631136.1|5e-121PREDICTED: general transcription factor IIH subunit 4-like isoform X2 [Nicotian
JMFF029L12Sequence126010220 (2)703002612 (2)ref|XP_009631136.1|1e-95PREDICTED: general transcription factor IIH subunit 4-like isoform X2 [Nicotian

Alignment

This contig is upended


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rJMFF021M13+                                           GCTACAGCAGGGACGGAAAGAGAGTTG
                      ____________________________________________________________
consensus                                              GCTACAGCAGGGACGGAAAGAGAGTTG
 
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rJMFF021M13+          GTTTATACNTACCAAATTAGCTACCAACCTCTCAATTAGCTTGGCAGATACATCATCAAG
                      ____________________________________________________________
consensus             GTTTATACNTACCAAATTAGCTACCAACCTCTCAATTAGCTTGGCAGATACATCATCAAG
 
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rJMFF021M13+          GAAAGAGGGATTTGTTGTTGTGGAAACAAACTTCAGGATGTACGCGTATTCCTCATCAAA
rJMFF029L12+                           TTGTGGAAACAAACTTCAGGATGTACGCGTATTCCTCATCAAA
                      ____________________________________________________________
consensus             GAAAGAGGGATTTGTTGTTGTGGAAACAAACTTCAGGATGTACGCGTATTCCTCATCAAA
 
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rJMFF021M13+          ATTACATTGTGAGATCCTGCGCCTTTTTGCTAGAGTGGAGTACCAGCTTCCGAATCTCAT
rJMFF029L12+          ATTACATTGTGAGATCCTGCGCCTTTTTGCTAGAGTGGAGTACCAGCTTCCGAATCTCAT
                      ____________________________________________________________
consensus             ATTACATTGTGAGATCCTGCGCCTTTTTGCTAGAGTGGAGTACCAGCTTCCGAATCTCAT
 
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rJMFF021M13+          TGTTGGTGCTATTACAAAAGAAAGCTTGTACAAAGCTTTTCAAAACGGCATAAGTGCTGA
rJMFF029L12+          TGTTGGTGCTATTACAAAAGAAAGCTTGTACAAAGCTTTTCAAAACGGCATAAGTGCTGA
                      ____________________________________________________________
consensus             TGTTGGTGCTATTACAAAAGAAAGCTTGTACAAAGCTTTTCAAAACGGCATAAGTGCTGA
 
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rJMFF021M13+          GCAGATAATTTCTTTCTGTCAGCAGAACGCACATCCAAGGGTTGCCGAGAGAATACCAGC
rJMFF029L12+          GCAGATAATTTCTTTCTGTCAGCAGAACGCACATCCAAGGGTTGCCGAGAGAATACCAGC
                      ____________________________________________________________
consensus             GCAGATAATTTCTTTCTGTCAGCAGAACGCACATCCAAGGGTTGCCGAGAGAATACCAGC
 
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rJMFF021M13+          CGTTCCAGAAAACGTCACTGACCAGATTAGGTTGTGGGAATCCGATCTGAACAGGGTTGA
rJMFF029L12+          CGTTCCAGAAAACGTCACTGACCAGATTAGGTTGTGGGAATCCGATCTGAACAGGGTTGA
                      ____________________________________________________________
consensus             CGTTCCAGAAAACGTCACTGACCAGATTAGGTTGTGGGAATCCGATCTGAACAGGGTTGA
 
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rJMFF021M13+          AATGATGCCAGCCCATCTTTACGAGGAATTCCCCTCGAGAGACGCCTTTGAGGCTGCTTG
rJMFF029L12+          AATGATGCCAGCCCATCTTTACGAGGAATTCCCCTCGAGAGACGCCTTTGAGGCTGCTTG
                      ____________________________________________________________
consensus             AATGATGCCAGCCCATCTTTACGAGGAATTCCCCTCGAGAGACGCCTTTGAGGCTGCTTG
 
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rJMFF021M13+          CGATTTTGCACGAGAATATGGAGGATTGCTGTGGGAGGACTCTAAGCGAATGCGAATCGT
rJMFF029L12+          CGATTTTGCACGAGAATATGGAGGATTGCTGTGGGAGGACTCTAAGCGAATGCGAATCGT
                      ____________________________________________________________
consensus             CGATTTTGCACGAGAATATGGAGGATTGCTGTGGGAGGACTCTAAGCGAATGCGAATCGT
 
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rJMFF021M13+          GGTGAAGGCAGAAATTCTTGCTAACATGAAAGAGTTCCTTCGTCGAAAGCAATAATCAGT
rJMFF029L12+          GGTGAAGGCAGAAATTCTTGCTAACATGAAAGAGTTCCTTCGTCGAAAGCAATAATCAGT
                      ____________________________________________________________
consensus             GGTGAAGGCAGAAATTCTTGCTAACATGAAAGAGTTCCTTCGTCGAAAGCAATAATCAGT
 
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rJMFF021M13+          TGTGTCTTCCCTCAATATTTATGAGAGTTTAAGGTTAGATTGTTTCTTTGTGCAATGTTT
rJMFF029L12+          TGTGTCTTCCCTCAATATTTATGAGAGTTTAAGGTTAGATTGTTTCTTTGTGCAATGTTT
                      ____________________________________________________________
consensus             TGTGTCTTCCCTCAATATTTATGAGAGTTTAAGGTTAGATTGTTTCTTTGTGCAATGTTT
 
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rJMFF021M13+          TGTTCAAGTGGAAGTATGTGGGAATTTTGACAGTCTACATTCGACATAACATAATATATA
rJMFF029L12+          TGTTCAAGTGGAAGTATGTGGGAATTTTGACAGTCTACATTCGACATAACATAATATATA
                      ____________________________________________________________
consensus             TGTTCAAGTGGAAGTATGTGGGAATTTTGACAGTCTACATTCGACATAACATAATATATA
 
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rJMFF021M13+          TACATATATGTCATAACCATGTATACATATCATT                          
rJMFF029L12+          TACATATATGTCATAACCATGTATACATATCATTTGATAGTGAAAAATTAGTCAAATAGC
                      ____________________________________________________________
consensus             TACATATATGTCATAACCATGTATACATATCATTTGATAGTGAAAAATTAGTCAAATAGC
 
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rJMFF029L12+          AAAACACAACTCAAAGTTATGAACTATTGATCGTTTCCACTATCAAAAAGTTCTAAAATA
                      ____________________________________________________________
consensus             AAAACACAACTCAAAGTTATGAACTATTGATCGTTTCCACTATCAAAAAGTTCTAAAATA