| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029K09 | Sequence | 470 | 002611 (6) | ref|XP_011069345.1| | 1e-19 | PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Sesamum indicum] | 615 | 002611 (6) | gb|KJB71820.1| | 6e-66 | hypothetical protein B456_011G142800 [Gossypium raimondii] |
| JMSF009N02 | Sequence | 385 | 002611 (6) | ref|XP_011069345.1| | 9e-15 | PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Sesamum indicum] | 682 | 002611 (6) | gb|KJB71820.1| | 7e-80 | hypothetical protein B456_011G142800 [Gossypium raimondii] |
| JMSF050K17 | Sequence | 671 | 002611 (6) | emb|CBI36658.3| | 8e-72 | unnamed protein product [Vitis vinifera] | 672 | 002611 (6) | gb|KJB71820.1| | 6e-80 | hypothetical protein B456_011G142800 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
JMFF029K09- GCTTCTCATTTCTTGATTATAACCTTTTCTCTATCTCTCTCACAACAT
____________________________________________________________
consensus GCTTCTCATTTCTTGATTATAACCTTTTCTCTATCTCTCTCACAACAT
. : . : . : . : . : . :
JMSF009N02- CTCCATTCACAACAACAAACCACAAATGGCCACTAATTCAATCAACACCATTAACCAC
JMFF029K09- TTCTCCATTCACAACAACAAACCACAAATGGCCACTAATTCAATCAACACCATTAACCAC
JMSF050K17- AACAAACCACAAATGGCCACTAATTCAATCAACACCATTAACCAC
____________________________________________________________
consensus TTCTCCATTCACAACAACAAACCACAAATGGCCACTAATTCAATCAACACCATTAACCAC
. : . : . : . : . : . :
JMSF009N02- GGCCACCGTCACGCCGGCCACCGTACGTTAAGGCGGCGCCATTCAATGGATTGCCCGCGT
JMFF029K09- GGCCACCGTCACGCCGGCCACCGTACGTTAAGGCGGCGCCATTCAATGGATTGCCCGCGT
JMSF050K17- GGCCACCGTCACGCCGGCCACCGTACGTTAAGGCGGCGCCATTCAATGGATTGCCCGCGT
____________________________________________________________
consensus GGCCACCGTCACGCCGGCCACCGTACGTTAAGGCGGCGCCATTCAATGGATTGCCCGCGT
. : . : . : . : . : . :
JMSF009N02- TCTTCTTCTTCTTCTTTCTTCCTCAGACCGGCCACCACCGCCACGAGAACCATCACCGCC
JMFF029K09- TCTTCTTCTTCTTCTTTCTTCCTCAGACCGGCCACCACCGCCACGAGAACCATCACCGCC
JMSF050K17- TCTTCTTCTTCTTCTTTCTTCCTCAGACCGGCCACCACCGCCACGAGAACCATCACCGCC
____________________________________________________________
consensus TCTTCTTCTTCTTCTTTCTTCCTCAGACCGGCCACCACCGCCACGAGAACCATCACCGCC
. : . : . : . : . : . :
JMSF009N02- GGCGGCGCCGCGCTTTCCTACGGGACTACTTCCAGTTTCGCGCTGCCGTCGTCAGCCACC
JMFF029K09- GGCGGCGCCGCGCTTTCCTACGGGACTACTTCCAGTTTCGCGCTGCCGTCGTCAGCCACC
JMSF050K17- GGCGGCGCCGCGCTTTCCTACGGGACTACTTCCAGTTTCGCGCTGCCGTCGTCAGCCACC
____________________________________________________________
consensus GGCGGCGCCGCGCTTTCCTACGGGACTACTTCCAGTTTCGCGCTGCCGTCGTCAGCCACC
. : . : . : . : . : . :
JMSF009N02- ACGCCCTCCACTTCCGAAACCGCCATCTCCTACGACCTCCTGGAGCAGCACCTCGCCGGC
JMFF029K09- ACGCCCTCCACTTCCGAAACCGCCATCTCCTACGACCTCCTGGAGCAGCACCTCGCCGGC
JMSF050K17- ACGCCCTCCACTTCCGAAACCGCCATCTCCTACGACCTCCTGGAGCAGCACCTCGCCGGC
rJMSF050K17+ CCTGGAGCAGCACCTCGCCGGC
rJMSF009N02+ CCTGGAGCAGCACCTCGCCGGC
____________________________________________________________
consensus ACGCCCTCCACTTCCGAAACCGCCATCTCCTACGACCTCCTGGAGCAGCACCTCGCCGGC
. : . : . : . : . : . :
JMSF009N02- CAGAACTTCCGGCAGGCCGACGAGGAGACCCGCCGCCTCCTCATTTCTCTGGCAGGCGAC
JMFF029K09- CAGAACTTCCGGCAGGCCGACGAGGAGACCCGCCGCCTCCTCATTTCTCTGGCAGGCGAC
JMSF050K17- CAGAACTTCCGGCAGGCCGACGAGGAGACCCGCCGCCTCCTCATTTCTCTGGCAGGCGAC
rJMSF050K17+ CAGAACTTCCGGCAGGCCGACGAGGAGACCCGCCGCCTCCTCATTTCTCTGGCAGGCGAC
rJMSF009N02+ CAGAACTTCCGGCAGGCCGACGAGGAGACCCGCCGCCTCCTCATTTCTCTGGCAGGCGAC
rJMFF029K09+ TCTCTGGCAGGCGAC
____________________________________________________________
consensus CAGAACTTCCGGCAGGCCGACGAGGAGACCCGCCGCCTCCTCATTTCTCTGGCAGGCGAC
. : . : . : . : . : . :
JMSF009N02- GCCGCCCAGAAGCGCGGCTACGTCTT
JMFF029K09- GCCGCCCAGAAGCGCGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGCCGCCGAC
JMSF050K17- GCCGCCCAGAAGCGCGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGCCGCCGAC
rJMSF050K17+ GCCGCCCAGAAGCGCGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGCCGCCGAC
rJMSF009N02+ GCCGCCCAGAAGCGCGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGCCGCCGAC
rJMFF029K09+ GCCGCCCAGAAGCGCGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGCCGCCGAC
____________________________________________________________
consensus GCCGCCCAGAAGCGCGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGCCGCCGAC
. : . : . : . : . : . :
JMFF029K09- CT
JMSF050K17- CTCCAGTACATCGACTCCCTGTGGCGGAAACACAGCGGCGAGAAATTCGGCTACAGCGTC
rJMSF050K17+ CTCCAGTACATCGACTCCCTGTGGCGGAAACACAGCGGCGAGAAATTCGGCTACAGCGTC
rJMSF009N02+ CTCCAGTACATCGACTCCCTGTGGCGGAAACACAGCGGCGAGAAATTCGGCTACAGCGTC
rJMFF029K09+ CTCCAGTACATCGACTCCCTGTGGCGGAAACACAGCGGCGAGAAATTCGGCTACAGCGTC
____________________________________________________________
consensus CTCCAGTACATCGACTCCCTGTGGCGGAAACACAGCGGCGAGAAATTCGGCTACAGCGTC
. : . : . : . : . : . :
JMSF050K17- CAAAAGAAAATCTGGAATAAAGTGGGCAAAGACTTCACCAAGCTCTTCCTCAAGCTGGGG
rJMSF050K17+ CAAAAGAAAATCTGGAATAAAGTGGGCAAAGACTTCACCAAGCTCTTCCTCAAGCTGGGG
rJMSF009N02+ CAAAAGAAAATCTGGAATAAAGTGGGCAAAGACTTCACCAAGCTCTTCCTCAAGCTGGGG
rJMFF029K09+ CAAAAGAAAATCTGGAATAAAGTGGGCAAAGACTTCACCAAGCTCTTCCTCAAGCTGGGG
____________________________________________________________
consensus CAAAAGAAAATCTGGAATAAAGTGGGCAAAGACTTCACCAAGCTCTTCCTCAAGCTGGGG
. : . : . : . : . : . :
JMSF050K17- TGGATGAAGAAGCTCGACACGGAGGTGGAGCAGTACAATTACCGGGCCTTCCCCGACGAG
rJMSF050K17+ TGGATGAAGAAGCTCGACACGGAGGTGGAGCAGTACAATTACCGGGCCTTCCCCGACGAG
rJMSF009N02+ TGGATGAAGAAGCTCGACACGGAGGTGGAGCAGTACAATTACCGGGCCTTCCCCGACGAG
rJMFF029K09+ TGGATGAAGAAGCTCGACACGGAGGTGGAGCAGTACAATTACCGGGCCTTCCCCGACGAG
____________________________________________________________
consensus TGGATGAAGAAGCTCGACACGGAGGTGGAGCAGTACAATTACCGGGCCTTCCCCGACGAG
. : . : . : . : . : . :
JMSF050K17- TTCACGTGGGAGATCTCCGACGACGGGGCGCCGCCGGACGGTCACCTGCCATTGACGAAT
rJMSF050K17+ TTCACGTGGGAGATCTCCGACGACGGGGCGCCGCCGGACGGTCACCTGCCATTGACGAAT
rJMSF009N02+ TTCACGTGGGAGATCTCCGACGACGGGGCGCCGCCGGACGGTCACCTGCCATTGACGAAT
rJMFF029K09+ TTCACGTGGGAGATCTCCGACGACGGGGCGCCGCCGGACGGTCACCTGCCATTGACGAAT
____________________________________________________________
consensus TTCACGTGGGAGATCTCCGACGACGGGGCGCCGCCGGACGGTCACCTGCCATTGACGAAT
. : . : . : . : . : . :
JMSF050K17- GCTCTGAGAGGAACCCAGCTGTTCA
rJMSF050K17+ GCTCTGAGAGGAACCCAGCTGTTCACTAGTATTCTCACCCACCCGGCTTTTGCGGGAGAA
rJMSF009N02+ GCTCTGAGAGGAACCCAGCTGTTCACTAGTATTCTCACCCACCCGGCTTTTGCGGGAGAA
rJMFF029K09+ GCTCTGAGAGGAACCCAGCTGTTCACTAGTATTCTCACCCACCCGGCTTTTGCGGGAGAA
____________________________________________________________
consensus GCTCTGAGAGGAACCCAGCTGTTCACTAGTATTCTCACCCACCCGGCTTTTGCGGGAGAA
. : . : . : . : . : . :
rJMSF050K17+ GACGAAGAAGATGAAGAAGAGGGGAAGAGCGGCATTAGTAGAGGTGAAGAGAAGGGGCGG
rJMSF009N02+ GACGAAGAAGATGAAGAAGAGGGGAAGAGCGGCATTAGTAGAGGTGAAGAGAAGGGGCGG
rJMFF029K09+ GACGAAGAAGATGAAGAAGAGGGGAAGAGCGGCATTAGTAGAGGTGAAGAGAAGGGGCGG
____________________________________________________________
consensus GACGAAGAAGATGAAGAAGAGGGGAAGAGCGGCATTAGTAGAGGTGAAGAGAAGGGGCGG
. : . : . : . : . : . :
rJMSF050K17+ GGGTTGAAGAATATGACATCATCATCGGTGTTTAAACCAGATTACAGCTTTTGATGATGA
rJMSF009N02+ GGGTTGAAGAATATGACATCATCATCGGTGTTTAAACCAGATTACAGCTTTTGATGATGA
rJMFF029K09+ GGGTTGAAGAATATGACATCATCATCGGTGTTTAAACCAGATTACAGCTTTTGATGATGA
____________________________________________________________
consensus GGGTTGAAGAATATGACATCATCATCGGTGTTTAAACCAGATTACAGCTTTTGATGATGA
. : . : . : . : . : . :
rJMSF050K17+ TGATGAAGAATCTTAATGCTTTGTTTG-TTGTTTAAGATTTAATTTGAATTTAGGTTGAT
rJMSF009N02+ TGATGAAGAATCTTAATGCTTTGTTTGTTTGTTTAAGATTTAATTTGAATTTAGGTTGAT
rJMFF029K09+ TGATGAAGAATCTTAATGCTTTGTTTGTTTGTTTAAGATTTAATTTGAATTTAGGTTGAT
____________________________________________________________
consensus TGATGAAGAATCTTAATGCTTTGTTTGTTTGTTTAAGATTTAATTTGAATTTAGGTTGAT
. : . : . : . : . : . :
rJMSF050K17+ GATTTATCGGAGCTCTGTACTTAGGAGTCATCGAGAAGCCATTAAACAAAA
rJMSF009N02+ GATTTATCGGAGCTCTGTACTTAGGAGTCATCGAGAAGCCATTAAACAAAAGGG
rJMFF029K09+ GATTTATCGGAGCTCTGTACTTAGGAGTCATCGAGAAGCCATTAAACAAAAGGGGAAGTG
____________________________________________________________
consensus GATTTATCGGAGCTCTGTACTTAGGAGTCATCGAGAAGCCATTAAACAAAAGGGGAAGTG