Contig 002606:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001K23Sequence485006683 (9)ref|XP_009606105.1|8e-67PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome752002606 (9)ref|XP_004249015.1|2e-105PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMFF012B11Sequence516006683 (9)ref|XP_009606105.1|2e-61PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome775002606 (9)ref|XP_004249015.1|3e-105PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMFF020L05Sequence521006683 (9)ref|XP_009606105.1|1e-66PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome737002606 (9)ref|XP_004249015.1|3e-94PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMFF022O11Sequence476006683 (9)ref|XP_009606105.1|6e-56PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome739002606 (9)ref|XP_004249015.1|4e-86PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMFF029A02Sequence529006683 (9)ref|XP_009606105.1|2e-67PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome829002606 (9)ref|XP_004249015.1|6e-77PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMFN014H09Sequence614002606 (9)ref|XP_004249015.1|1e-55PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMSF025I06Sequence673006683 (9)ref|XP_009606105.1|7e-104PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome737002606 (9)ref|XP_004249015.1|1e-102PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMSF026L03Sequence678006683 (9)ref|XP_009606105.1|1e-106PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome809002606 (9)ref|XP_004249015.1|8e-138PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]
JMSF043O10Sequence726006683 (9)ref|XP_009606105.1|8e-118PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tome572002606 (9)ref|XP_004249015.1|3e-55PREDICTED: serine/threonine-protein kinase At5g01020 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF026L03+                                                             GGTCAACAA
                      ____________________________________________________________
consensus                                                                GGTCAACAA
 
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rJMSF026L03+          GAATGATGATTGCTCTGGAGCAGCGAAAGGGCTAGCTTTCCTTCATAATGCAGAAAGGCC
                      ____________________________________________________________
consensus             GAATGATGATTGCTCTGGAGCAGCGAAAGGGCTAGCTTTCCTTCATAATGCAGAAAGGCC
 
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rJMSF026L03+          TGTAATTTATCGTGATTTCAAGACATCAAATATTTTATTGGATTCTGATTACACTGCAAA
                      ____________________________________________________________
consensus             TGTAATTTATCGTGATTTCAAGACATCAAATATTTTATTGGATTCTGATTACACTGCAAA
 
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rJMSF026L03+          ACTTTCTGATTTTGGTCTTGCAAAAGCTGGGCCACAAGGTGATGAGACTCATGTATCGAC
rJMSF025I06+                                       GGCCACAAGGTGATGAGACTCATGTATCGAC
rJMFF001K23+                            TGCAAAAGCTGGGCCACAAGGTGATGAGACTCATGTATCGAC
rJMFF012B11+                            TGCAAAAGCTGGGCCACAAGGTGATGAGACTCATGTATCGAC
rJMFF020L05+                                                                     C
rJMFF022O11+                                                                    AC
                      ____________________________________________________________
consensus             ACTTTCTGATTTTGGTCTTGCAAAAGCTGGGCCACAAGGTGATGAGACTCATGTATCGAC
 
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rJMSF026L03+          ACGAGTGATGGGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACACCTTA
rJMSF025I06+          ACGAGTGATGGGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACACCTTA
rJMFF001K23+          ACGAGTGATGGGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACACCTTA
rJMFF012B11+          ACGAGTGATGGGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACACCTTA
rJMFF020L05+          ACGAGTGATGGGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACACCTTA
rJMFF022O11+          ACGAGTGATGGGTACATATGGATATGCAGCTCCCTGAATATGTGATGACGGGACACCTTA
rJMFF029A02+                    GGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACNCCTTA
                      ____________________________________________________________
consensus             ACGAGTGATGGGTACATATGGATATGCAGCT-CCTGAATATGTGATGACGGGACACCTTA
 
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rJMSF026L03+          CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
rJMSF025I06+          CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGG
rJMFF001K23+          CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
rJMFF012B11+          CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
rJMFF020L05+          CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
rJMFF022O11+          CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
rJMFF029A02+          CTGCCAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
                      ____________________________________________________________
consensus             CTG-CAAGGAGTGATGTGTACAGTTTTGGAGTGGTTCTCCTGGAGTTATTGACGGGAAGA
 
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rJMSF026L03+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
rJMSF025I06+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
rJMFF001K23+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
rJMFF012B11+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
rJMFF020L05+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
rJMSF043O10+                                            AAAACCTGGTAGATTGGGCACGACCA
rJMFF022O11+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
JMFN014H09-                                            CAAAACCTGGTAGATTGGGCACGACCA
rJMFF029A02+          AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
                      ____________________________________________________________
consensus             AAGTCTGTTGATAAGACGAGACCAAGCAAGGAGCAAAACCTGGTAGATTGGGCACGACCA
 
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rJMSF026L03+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMSF025I06+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMFF001K23+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMFF012B11+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMFF020L05+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMSF043O10+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMFF022O11+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
JMFN014H09-           AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
rJMFF029A02+          AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
                      ____________________________________________________________
consensus             AAGCTTAATGACAAGAGAAAAATGCTTCAAATAATAGATCCTAGATTAGAGAACCAATAC
 
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rJMSF026L03+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
rJMSF025I06+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
rJMFF001K23+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
rJMFF012B11+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTAAGCCAAAATCCT
rJMFF020L05+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
rJMSF043O10+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
rJMFF022O11+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
JMFN014H09-           TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
rJMFF029A02+          TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
                      ____________________________________________________________
consensus             TCTGTGAGGGCAGCACAGAAAGCCTGTAGTCTGGCTTACTACTGCTTGAGCCAAAATCCT
 
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rJMSF026L03+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMSF025I06+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMFF001K23+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMFF012B11+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMFF020L05+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMSF043O10+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMFF022O11+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
JMFN014H09-           AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
rJMFF029A02+          AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
                      ____________________________________________________________
consensus             AAAGCAAGACCCTTAATGAGTGATGTGGTTGAAACTCTGGAGCCCTTGCAATCCAGTGGA
 
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rJMSF026L03+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMSF025I06+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMFF001K23+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMFF012B11+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMFF020L05+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMSF043O10+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMFF022O11+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
JMFN014H09-           ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
rJMFF029A02+          ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
                      ____________________________________________________________
consensus             ATTGCAAATGAAGCCTCATCGTCGTCGTTATCTGGTGTTGGTGTTCCTTTTGGTGTGGGG
 
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rJMSF026L03+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMSF025I06+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMFF001K23+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMFF012B11+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMFF020L05+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMSF043O10+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMFF022O11+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
JMFN014H09-           AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
rJMFF029A02+          AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
                      ____________________________________________________________
consensus             AGGGTCCCCGAGTTTCAGTTGCATCACAGGTTTGCCAGCAATCTTGGGACTGCTGCTGGC
 
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rJMSF026L03+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMSF025I06+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMFF001K23+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMFF012B11+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMFF020L05+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMSF043O10+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMFF022O11+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
JMFN014H09-           TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
rJMFF029A02+          TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
                      ____________________________________________________________
consensus             TGCCGGTCTCCCAACCCAAATTGTTCCCCGGGTGGCCCTGCACCATGTAGGGTAAGATGA
 
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rJMSF026L03+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMSF025I06+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMFF001K23+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMFF012B11+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMFF020L05+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMSF043O10+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMFF022O11+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
JMFN014H09-           GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
rJMFF029A02+          GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
                      ____________________________________________________________
consensus             GGATTCTGACATGTATTTTGGTGTTTCATTGTGCACTCATCCTTTAACTCGTGAGTTGGG
 
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rJMSF026L03+          TGCATTGGTGTTGCTGTGCTAG                                      
rJMSF025I06+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
rJMFF001K23+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
rJMFF012B11+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
rJMFF020L05+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
rJMSF043O10+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
rJMFF022O11+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
JMFN014H09-           TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
rJMFF029A02+          TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
                      ____________________________________________________________
consensus             TGCATTGGTGTTGCTGTGCTAGGTGTAAATTGTGCTGGTAATGTAAGCCTTTCAGCGTCT
 
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rJMSF025I06+          TTGGTTGTGTTTGTTTAACAACTTC                                   
rJMFF001K23+          TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATG                      
rJMFF012B11+          TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATGTGAAAAAAAAGGTATGGTCAGT
rJMFF020L05+          TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATGTGAAAAAAAAGGTATGGTCAGT
rJMSF043O10+          TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTA                           
rJMFF022O11+          TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATGTGAAAAAAAAGGTATGGTCAGT
JMFN014H09-           TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATGTGAAAAAAAAGGTATGGTCAGT
rJMFF029A02+          TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATGTGAAAAAAAAGGTATGGTCAGT
                      ____________________________________________________________
consensus             TTGGTTGTGTTTGTTTAACAACTTCAAGCTGTACTATGTGAAAAAAAAGGTATGGTCAGT
 
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rJMFF012B11+          TTATGGCTGGATGCT                                             
rJMFF020L05+          TTATGGCTGGATGCTGAT                                          
rJMFF022O11+          TTATGGCTGGATGCTGAT                                          
JMFN014H09-           TTATGGCTGGATGCTGATATGGTTGGTTTCTTCTCTCTTTCCCATTT             
rJMFF029A02+          TTATGGCTGGATGCTGATATGGTTGGTTTCTTCTCTCTTTCCCATTTATATTTGCAAATT
                      ____________________________________________________________
consensus             TTATGGCTGGATGCTGATATGGTTGGTTTCTTCTCTCTTTCCCATTTATATTTGCAAATT
 
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rJMFF029A02+          CTACCATGTGTTTTTTAATGGTATGTTTATTCAAATTCAATGTGGTAATGTAGCACAAGA
                      ____________________________________________________________
consensus             CTACCATGTGTTTTTTAATGGTATGTTTATTCAAATTCAATGTGGTAATGTAGCACAAGA