Contig 002602:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF009G12-                                                                 GAGGTG
                      ____________________________________________________________
consensus                                                                   GAGGTG
 
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JMSF009G12-           ATGGGAAATATTTGGAGGATCTTAAGGTAAAGGGCAATGTGGAAAGACCAAGAATTTTAA
                      ____________________________________________________________
consensus             ATGGGAAATATTTGGAGGATCTTAAGGTAAAGGGCAATGTGGAAAGACCAAGAATTTTAA
 
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JMSF009G12-           GGAGTGATGTGAGGAATTGTGAAAAATCAGTGCTTGGACCATTGAATCCTGTTTCTATTG
                      ____________________________________________________________
consensus             GGAGTGATGTGAGGAATTGTGAAAAATCAGTGCTTGGACCATTGAATCCTGTTTCTATTG
 
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JMSF009G12-           GGAGAAGGCAGCCTTTGTCCGGGAAACAACACGAGTATAATATGAAGAATAAGTCAGATA
rJMSF009G12+                                                           TAAGTCAGATA
                      ____________________________________________________________
consensus             GGAGAAGGCAGCCTTTGTCCGGGAAACAACACGAGTATAATATGAAGAATAAGTCAGATA
 
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JMSF009G12-           AAGAGCAGAGAACTTCGAGTACAGGTGCCGAGGAGAAATATCTAGACNAAGATTATGCTC
rJMSF009G12+          AAGAGCAGAGAACTTCGAGTACAGGTGCCGAGGAGAAATATCTAGACAAAGATTATGCTC
                      ____________________________________________________________
consensus             AAGAGCAGAGAACTTCGAGTACAGGTGCCGAGGAGAAATATCTAGACAAAGATTATGCTC
 
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JMSF009G12-           TTTTCCTGCAATGCATGCAATGTGAAGGA                               
rJMSF009G12+          TTTTCCTGCAATGCATGCAATGTGAAGGATACACCTTGAAGGCTTTA--TTTCCAGACAA
rJMSF031E22+                    ATGCATGCAATGTGAAGGATACACCTTGAAGGCNTTTATTTTCCAGACAA
rJMFF026P03+                    ATGCATGCAATGTGAAGGATACACCTTGAAGGCTTTA--TTTCCAGACAA
                      ____________________________________________________________
consensus             TTTTCCTGCAATGCATGCAATGTGAAGGATACACCTTGAAGGCTTTA--TTTCCAGACAA
 
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rJMSF009G12+          CCAGCATGTGGAATATGATCGTGATGATTCTGGAGATGATGAAGTCCTGGTTATAGATTC
rJMSF031E22+          CCAGCATGTGGAATATGATCGTGATGATTCTGGAGATGATGAAGTCCTGGTTATAGATTC
rJMFF026P03+          CCAGCATGTGGAATATGATCGTGATGATTCTGGAGATGATGAAGTCCTGGTTATAGATTC
                      ____________________________________________________________
consensus             CCAGCATGTGGAATATGATCGTGATGATTCTGGAGATGATGAAGTCCTGGTTATAGATTC
 
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rJMSF009G12+          CTTTACATTTCACAATGGGGGAAGCTTCCATCCATGTGTCCCTTCAACAGATTATTGCGA
rJMSF031E22+          CTTTACATTTCACAATGGGGGAAGCTTCCATCCATGTGTCCCTTCAACAGATTATTGCGA
rJMFF026P03+          CTTTACATTTCACAATGGGGGAAGCTTCCATCCATGTGTCCCTTCAACAGATTATTGCGA
                      ____________________________________________________________
consensus             CTTTACATTTCACAATGGGGGAAGCTTCCATCCATGTGTCCCTTCAACAGATTATTGCGA
 
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rJMSF009G12+          GGTGGGCAACACACTGTACGAAGACTCTCAATTTAGACAGGAGATAATCAGTATTCTTAG
rJMSF031E22+          GGTGGGCAACACACTGTACGAAGACTCTCAATTTAGACAGGAGATAATCAGTATTCTTAG
rJMFF026P03+          GGTGGGCAACACACTGTACGAAGACTCTCAATTTAGACAGGAGATAATCAGTATTCTTAG
                      ____________________________________________________________
consensus             GGTGGGCAACACACTGTACGAAGACTCTCAATTTAGACAGGAGATAATCAGTATTCTTAG
 
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rJMSF009G12+          GACGCCCTATGACCAAGCAGAGTTTGAAAAGCTTTTGCAAGATGTCAAAGTTCAAAAGCC
rJMSF031E22+          GACGCCCTATGACCAAGCAGAGTTTGAAAAGCTTTTGCAAGATGTCAAAGTTCAAAAGCC
rJMFF026P03+          GACGCCCTATGACCAAGCAGAGTTTGAAAAGCTTTTGCAAGATGTCAAAGTTCAAAAGCC
                      ____________________________________________________________
consensus             GACGCCCTATGACCAAGCAGAGTTTGAAAAGCTTTTGCAAGATGTCAAAGTTCAAAAGCC
 
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rJMSF009G12+          AATTGATAGAAATTTGGAGTTACGCCATGGGAGAGAGAGACGCTGCCCATCAAATAGAAT
rJMSF031E22+          AATTGATAGAAATTTGGAGTTACGCCATGGGAGAGAGAGACGCTGCCCATCAAATAGAAT
rJMFF026P03+          AATTGATAGAAATTTGGAGTTACGCCATGGGAGAGAGAGACGCTGCCCATCAAATAGAAT
                      ____________________________________________________________
consensus             AATTGATAGAAATTTGGAGTTACGCCATGGGAGAGAGAGACGCTGCCCATCAAATAGAAT
 
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rJMSF009G12+          TGGAAAATCTTATCTTGATCACTTTGATGGTTTTAACAACAAACTTGAAGAAGTGAGTCC
rJMSF031E22+          TGGAAAATCTTATCTTGATCACTTTGATGGTTTTAACAACAAACTTGAAGAAGTGAGTCC
rJMFF026P03+          TGGAAAATCTTATCTTGATCACTTTGATGGTTTTAACAACAAACTTGAAGAAGTGAGTCC
                      ____________________________________________________________
consensus             TGGAAAATCTTATCTTGATCACTTTGATGGTTTTAACAACAAACTTGAAGAAGTGAGTCC
 
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rJMSF009G12+          TGACAAACATAAAATGTTGAACATCTTGCGTGGATTTTTCTATTGGCTACAGAATATGAG
rJMSF031E22+          TGACAAACATAAAATGTTGAACATCTTGCGTGGATTTTTCTATTGGCTACAGAATATGAG
rJMFF026P03+          TGACAAACATAAAATGTTGAACATCTTGCGTGGATTTTTCTATTGGCTACAGAATATGAG
                      ____________________________________________________________
consensus             TGACAAACATAAAATGTTGAACATCTTGCGTGGATTTTTCTATTGGCTACAGAATATGAG
 
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rJMSF009G12+          TAAGAAAGGAGCGTTCAAGCCTTGGGAGGACCCAAAATGCCTTGCTGTTATGCCTGGATC
rJMSF031E22+          TAAGAAAGGAGCGTTCAAGCCTTGGGAGGACCCAAAATGCCTTGCTGTTATGCCTGGATC
rJMFF026P03+          TAAGAAAGGAGCGTTCAAGCCTTGGGAGGACCCAAAATGCCTTGCTGTTATGCCTGGATC
                      ____________________________________________________________
consensus             TAAGAAAGGAGCGTTCAAGCCTTGGGAGGACCCAAAATGCCTTGCTGTTATGCCTGGATC
 
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rJMSF009G12+          TTGCTAGGAGGGAGGAGTTGGAAAGACACAATTAAAATTCCTTTTTGCAGCAGCCAGCAG
rJMSF031E22+          TTGCTAGGAGGGAGGAGTTGGAAAGACACAATTAAAATTCCTTTTTGCAGCAGCCAGCAG
rJMFF026P03+          TTGCTAGGAGGGAGGAGTTGGAAAGACACAATTAAAATTCCTTTTTGCAGCAGCCAGCAG
                      ____________________________________________________________
consensus             TTGCTAGGAGGGAGGAGTTGGAAAGACACAATTAAAATTCCTTTTTGCAGCAGCCAGCAG
 
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rJMSF009G12+          GAATGTAGTGTAGTAGTGTTTTTGAGACTTGAGATGGCAATTAAAGGCTACTTTTTTCTC
rJMSF031E22+          GAATGTAGTGTAGTAGTGTTTTTGAGACTTGAGATGGCAATTAAAGGCTACTTTTTTCTC
rJMFF026P03+          GAATGTAGTGTAGTAGTGTTTTTGAGACTTGAGATGGCAATTAAAGGCTACTTTTTTCTC
                      ____________________________________________________________
consensus             GAATGTAGTGTAGTAGTGTTTTTGAGACTTGAGATGGCAATTAAAGGCTACTTTTTTCTC
 
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rJMSF009G12+          TTTAAATATGTACTAGTAGTTT                                      
rJMSF031E22+          TTTAAATATGTACTAGTAGTTT                                      
rJMFF026P03+          TTTAAATATGTACTAGTAGTTTTGTATCCACAACTGAAAACGAAAAGATAGCAATCAAAG
                      ____________________________________________________________
consensus             TTTAAATATGTACTAGTAGTTTTGTATCCACAACTGAAAACGAAAAGATAGCAATCAAAG