Contig 002586:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022N01Sequence433002586 (2)ref|XP_002276413.1|5e-81PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Vitis vinif709002586 (2)ref|XP_010522570.1|2e-95PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Tarenaya ha

Alignment

This contig is upended


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JMFF022N01-                                                       GCACCCTCATATCAAA
                      ____________________________________________________________
consensus                                                         GCACCCTCATATCAAA
 
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JMFF022N01-           CATGAATATCTTCTCCAAGAAGCCTACGCCTAAAGAGGTGCTTCGAGACAGTAAACGAGA
                      ____________________________________________________________
consensus             CATGAATATCTTCTCCAAGAAGCCTACGCCTAAAGAGGTGCTTCGAGACAGTAAACGAGA
 
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JMFF022N01-           AATGAACAATGCCACCAGAGGCATAGAGAAGGAAATTTCTGGTTTGCAGTTGGAGGAAAA
rJMFF022N01+                     CCACCAGAGGCATAGAGAAGGAAATTTCTGGTTTGCAGTTGGAGGAAAA
                      ____________________________________________________________
consensus             AATGAACAATGCCACCAGAGGCATAGAGAAGGAAATTTCTGGTTTGCAGTTGGAGGAAAA
 
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JMFF022N01-           GAAGCTTGTTGCTGAGATAAAGAGAACTGCTAAATCTGGAAATGAGGCAGCAACTAAGAT
rJMFF022N01+          GAAGCTTGTTGCTGAGATAAAGAGAACTGCTAAATCTGGAAATGAGGCAGCAACTAAGAT
                      ____________________________________________________________
consensus             GAAGCTTGTTGCTGAGATAAAGAGAACTGCTAAATCTGGAAATGAGGCAGCAACTAAGAT
 
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JMFF022N01-           TCTAGCACGTCAGCTAGTCAGGCTAAGGCAGCAAATTGCTAACCTGCAAGGAAGTCGAGC
rJMFF022N01+          TCTAGCACGTCAGCTAGTCAGGCTAAGGCAGCAAATTGCTAACCTGCAAGGAAGTCGAGC
                      ____________________________________________________________
consensus             TCTAGCACGTCAGCTAGTCAGGCTAAGGCAGCAAATTGCTAACCTGCAAGGAAGTCGAGC
 
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JMFF022N01-           TCAGATGAGAGGCATAGCAACTCATACTCAGGCAATACATGCCCAAACTTCAGTTGCTGC
rJMFF022N01+          TCAGATGAGAGGCATAGCAACTCATACTCAGGCAATACATGCCCAAACTTCAGTTGCTGC
                      ____________________________________________________________
consensus             TCAGATGAGAGGCATAGCAACTCATACTCAGGCAATACATGCCCAAACTTCAGTTGCTGC
 
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JMFF022N01-           AGGCATGAAAGGTGCCACTAAAGCCATGACAGCTATGAACAAGCAAATGGCTCCAGCAAA
rJMFF022N01+          AGGCATGAAAGGTGCCACTAAAGCCATGACAGCTATGAACAAGCAAATGGCTCCAGCAAA
                      ____________________________________________________________
consensus             AGGCATGAAAGGTGCCACTAAAGCCATGACAGCTATGAACAAGCAAATGGCTCCAGCAAA
 
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JMFF022N01-           ACAGGCGAAGGTTATTCAAGATTTCCAGAAGCAATCAGCACAAATGGATATGATTAC   
rJMFF022N01+          ACAGGCGAAGGTTATTCAAGATTTCCAGAAGCAATCAGCACAAATGGATATGATTACGGA
                      ____________________________________________________________
consensus             ACAGGCGAAGGTTATTCAAGATTTCCAGAAGCAATCAGCACAAATGGATATGATTACGGA
 
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rJMFF022N01+          AATGATGTCAGATGCCATAGATGATGCTTTGGATGATGATGAAGCTGAAGAGGAAACTGA
                      ____________________________________________________________
consensus             AATGATGTCAGATGCCATAGATGATGCTTTGGATGATGATGAAGCTGAAGAGGAAACTGA
 
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rJMFF022N01+          TGAGTTGACAAATCAGGTCCTTGATGAAATTGGTGTTGATGTTGCTTCACAGTTATCGGC
                      ____________________________________________________________
consensus             TGAGTTGACAAATCAGGTCCTTGATGAAATTGGTGTTGATGTTGCTTCACAGTTATCGGC
 
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rJMFF022N01+          AGCTCCAAAAGGAAAAATTGCTGGGAAAAAGGTCGAGGAGAGTAGCTCGGGAATGAATGA
                      ____________________________________________________________
consensus             AGCTCCAAAAGGAAAAATTGCTGGGAAAAAGGTCGAGGAGAGTAGCTCGGGAATGAATGA
 
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rJMFF022N01+          ACTCGAGAAGAGATTGGCTGCCCTTAGAAGTTAGAAATCCTTAAGGTCAATGCCTCCTTT
                      ____________________________________________________________
consensus             ACTCGAGAAGAGATTGGCTGCCCTTAGAAGTTAGAAATCCTTAAGGTCAATGCCTCCTTT
 
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rJMFF022N01+          GTTTCCAATTGTGTCTTCTCATTTTATTGCTGTGATGACAAGTTTACTGTAATTCAATGT
                      ____________________________________________________________
consensus             GTTTCCAATTGTGTCTTCTCATTTTATTGCTGTGATGACAAGTTTACTGTAATTCAATGT
 
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rJMFF022N01+          ACATGACTTTTCTCTATTAAGCATTATGATATGTNGGAGCTTGGTTNTAAGATCCTCAAA
                      ____________________________________________________________
consensus             ACATGACTTTTCTCTATTAAGCATTATGATATGTNGGAGCTTGGTTNTAAGATCCTCAAA