Contig 002585:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011E01Sequence464003194 (3)emb|CDP06048.1|8e-22unnamed protein product [Coffea canephora]586002585 (3)ref|XP_009783768.1|2e-44PREDICTED: protein trichome birefringence-like 42 [Nicotiana sylvestris]
JMFF022K21Sequence472003194 (3)emb|CDP06048.1|2e-24unnamed protein product [Coffea canephora]694002585 (3)ref|XP_009783768.1|1e-65PREDICTED: protein trichome birefringence-like 42 [Nicotiana sylvestris]
JMFF029A09Sequence503003194 (3)emb|CDP06048.1|3e-31unnamed protein product [Coffea canephora]686002585 (3)ref|XP_009783768.1|5e-63PREDICTED: protein trichome birefringence-like 42 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF029A09+                                            GGGTCGATTCCAACATTGATCCCAAC
rJMFF022K21+                                    GGCTAATTGGGTCGATTCCAACATTGATCCCAAC
                      ____________________________________________________________
consensus                                       GGCTAATTGGGTCGATTCCAACATTGATCCCAAC
 
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rJMFF029A09+          AAAACTAAAGTGTTCTTTCAAGGAATTTCTGCTGTTCATTATCATGGCAACGAATGGAAC
rJMFF011E01+                                                                     C
rJMFF022K21+          AAAACTAAAGTGTTCTTTCAAGGAATTTCTGCTGTTCATTATCATGGCAACGAATGGAAC
                      ____________________________________________________________
consensus             AAAACTAAAGTGTTCTTTCAAGGAATTTCTGCTGTTCATTATCATGGCAACGAATGGAAC
 
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rJMFF029A09+          GAACCAGCAGTACAAGACTGCAGGCATCAAACGAAGCCAATAGAGGGATCGAGTTTCCCA
rJMFF011E01+          GAACCAGCAGTACAAGACTGCAGGCATCAAACGAAGCCAATAGAGGGATCGAGTTTCCCA
rJMFF022K21+          GAACCAGCAGTACAAGACTGCAGGCATCAAACGAAGCCAATAGAGGGATCGAGTTTCCCA
                      ____________________________________________________________
consensus             GAACCAGCAGTACAAGACTGCAGGCATCAAACGAAGCCAATAGAGGGATCGAGTTTCCCA
 
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rJMFF029A09+          GGCGAGAGATACCCGGGAGAAGCGGTGGTGAAGGGCGTGTTGGGAAACATGACAAACAGT
rJMFF011E01+          GGCGAGAGATACCCGGGAGAAGCGGTGGTGAAGGGCGTGTTGGGAAACATGACAAACAGT
rJMFF022K21+          GGCGAGAGATACCCGGGAGAAGCGGTGGTGAAGGGCGTGTTGGGAAACATGACAAACAGT
                      ____________________________________________________________
consensus             GGCGAGAGATACCCGGGAGAAGCGGTGGTGAAGGGCGTGTTGGGAAACATGACAAACAGT
 
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rJMFF029A09+          GTATACTTGCTCGATATCGCATTGCTCACTCAACTGAGAAAAGATGGACATCCATCCACA
rJMFF011E01+          GTATACTTGCTCGATATCGCATTGCTCACTCAACTGAGAAAAGATGGACATCCATCCACA
rJMFF022K21+          GTATACTTGCTCGATATCGCATTGCTCACTCAACTGAGAAAAGATGGACATCCATCCACA
                      ____________________________________________________________
consensus             GTATACTTGCTCGATATCGCATTGCTCACTCAACTGAGAAAAGATGGACATCCATCCACA
 
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rJMFF029A09+          TATGCTGGAGGAGTAGTAGACTGCAGTCACTGGTGTGTAGCTGGAGTTCCAGATTCTTGG
rJMFF011E01+          TATGCTGGAGGAGTAGTAGACTGCAGTCACTGGTGTGTAGCTGGAGTTCCAGATTCTTGG
rJMFF022K21+          TATGCTGGAGGAGTAGTAGACTGCAGTCACTGGTGTGTAGCTGGAGTTCCAGATTCTTGG
                      ____________________________________________________________
consensus             TATGCTGGAGGAGTAGTAGACTGCAGTCACTGGTGTGTAGCTGGAGTTCCAGATTCTTGG
 
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rJMFF029A09+          AACCAAATACTGTACTCAATTTTGATTCAGAACTAGTTTCTGCTTGCATCAAATGGTTGC
rJMFF011E01+          AACCAAATACTGTACTCAATTTTGATTCAGAACTAGTTTCTGCTTGCATCAAATGGTTGC
rJMFF022K21+          AACCAAATACTGTACTCAATTTTGATTCAGAACTAGTTTCTGCTTGCATCAAATGGTTGC
                      ____________________________________________________________
consensus             AACCAAATACTGTACTCAATTTTGATTCAGAACTAGTTTCTGCTTGCATCAAATGGTTGC
 
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rJMFF029A09+          CACTTGCCAGGGGCCAGGCTAACCATCCAGATAATACAAATAAACAACCAGACTACATTA
rJMFF011E01+          CACTTGCCAGGGGCCAGGCTAACCATCCAGATAATACAAATAAACAACCAGACTACATTA
rJMFF022K21+          CACTTGCCAGGGGCCAGGCTAACCATCCAGATAATACAAATAAACAACCAGACTACATTA
                      ____________________________________________________________
consensus             CACTTGCCAGGGGCCAGGCTAACCATCCAGATAATACAAATAAACAACCAGACTACATTA
 
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rJMFF029A09+          AAGATTATGAGTCTTTTGACCCATCTTAGTTACATAGATGTGGTTGCAACTGCATACATA
rJMFF011E01+          AAGATTATGAGTCTTTTGACCCATCTTAGTTACATAGATGTGGTTGCAACTGCATACATA
rJMFF022K21+          AAGATTATGAGTCTTTTGACCCATCTTAGTTACATAGATGTGGTTGCAACTGCATACATA
                      ____________________________________________________________
consensus             AAGATTATGAGTCTTTTGACCCATCTTAGTTACATAGATGTGGTTGCAACTGCATACATA
 
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rJMFF029A09+          TATGTATATGCTACTCTGTTATTTGCATCTGTCCTCATAATTCAATCTTTTCAGTTAGTC
rJMFF011E01+          TATGTATATGCTACTCTGTTATTTGCATCTGTCCTCATAATTCAATCTTTTCAGTTAGTC
rJMFF022K21+          TATGTATATGCTACTCTGTTATTTGCATCTGTCCTCATAATTCAATCTTTTCAGTTAGTC
                      ____________________________________________________________
consensus             TATGTATATGCTACTCTGTTATTTGCATCTGTCCTCATAATTCAATCTTTTCAGTTAGTC
 
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rJMFF029A09+          ATATTTTGATCGCAAATTATTCTGTAGACCCAGGTCCACCTTGCAAGGTGAATCCGAGTC
rJMFF011E01+          ATATTTTGATCGCAAATTATTCTGTAGACCCAGGTCCACCTTGCAAGGTGAATCCGAGTC
rJMFF022K21+          ATATTTTGATCGCAAATTATTCTGTAGACCCAGGTCCACCTTGCAAGGTGAATCCGAGTC
                      ____________________________________________________________
consensus             ATATTTTGATCGCAAATTATTCTGTAGACCCAGGTCCACCTTGCAAGGTGAATCCGAGTC
 
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rJMFF029A09+          TAAATATTTACAATTTACCTTTTATTTGTATACTACTAACATATATGTAATTGATTACCT
rJMFF011E01+          TAAATATTTACAATTTACCTTTTATTNGTATACTACTAACATATA               
rJMFF022K21+          TAAATATTTACAATTTACCTTTTATTTGTATACTACTAACATATATGTAATTGATTACCT
                      ____________________________________________________________
consensus             TAAATATTTACAATTTACCTTTTATTTGTATACTACTAACATATATGTAATTGATTACCT