Contig 002584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P06Sequence484003164 (11)gb|ACF17656.1|5e-68putative glutamine synthase 2 [Capsicum annuum]717002584 (9)ref|XP_004167630.1|1e-80PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF010I10Sequence598003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]735002584 (9)ref|XP_011071523.1|4e-112PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF022F17Sequence589003164 (11)gb|ACF17656.1|2e-88putative glutamine synthase 2 [Capsicum annuum]773002584 (9)ref|XP_011071523.1|5e-113PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF035E19Sequence599003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]756002584 (9)ref|XP_011071523.1|2e-125PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF048K15Sequence482003164 (11)gb|ACF17656.1|5e-62putative glutamine synthase 2 [Capsicum annuum]522002584 (9)ref|XP_004167630.1|8e-53PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF051K07Sequence595003164 (11)gb|ACF17656.1|7e-84putative glutamine synthase 2 [Capsicum annuum]630002584 (9)ref|XP_004167630.1|5e-72PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFN042F04Sequence186002584 (9)ref|XP_010450398.1|1e-30PREDICTED: glutamine synthetase, chloroplastic/mitochondrial-like [Camelina sat
JMSF018O14Sequence497003164 (11)gb|ACF17656.1|1e-64putative glutamine synthase 2 [Capsicum annuum]741002584 (9)ref|XP_011071523.1|4e-98PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMSF028E22Sequence647003164 (11)gb|ACF17656.1|3e-86putative glutamine synthase 2 [Capsicum annuum]673002584 (9)ref|XP_011071523.1|3e-100PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic

Alignment

This contig is upended


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rJMFF035E19+                                    GTCGTTTGGACGTGATATATCAGACGCTCACTAC
                      ____________________________________________________________
consensus                                       GTCGTTTGGACGTGATATATCAGACGCTCACTAC
 
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rJMFF035E19+          AAGGCCTGCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
rJMFF010I10+                 GCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
rJMSF028E22+                                                                    GC
rJMFF022F17+                 GCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
                      ____________________________________________________________
consensus             AAGGCCTGCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
 
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rJMFF035E19+          CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMFF010I10+          CAGTGGGAATTCCAAGTAGGTCNTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMSF028E22+          CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMSF018O14+                GAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMFF005P06+                                                                    GT
rJMFF022F17+          CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
                      ____________________________________________________________
consensus             CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
 
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rJMFF035E19+          GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMFF010I10+          GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMSF028E22+          GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMSF018O14+          GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMFF005P06+          GCTAGATACATTCTNGAGAGAATTACTGANCAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMFF051K07+                                                                GATCCA
rJMFF022F17+          GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
                      ____________________________________________________________
consensus             GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
 
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rJMFF035E19+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF010I10+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMSF028E22+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMSF018O14+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF005P06+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
JMFN042F04-                 ATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF051K07+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF022F17+          AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
                      ____________________________________________________________
consensus             AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
 
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rJMFF035E19+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF010I10+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMSF028E22+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMSF018O14+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF048K15+            GCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF005P06+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAGTTTTGAACCTCTCTCTTCGC
JMFN042F04-           ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTCGAACCTCTCTCTTCCC
rJMFF051K07+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF022F17+          ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
                      ____________________________________________________________
consensus             ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
 
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rJMFF035E19+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF010I10+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMSF028E22+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMSF018O14+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF048K15+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF005P06+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
JMFN042F04-           CATCCGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAAGAGGCTGCAGGGCAAACAT
rJMFF051K07+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF022F17+          CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
                      ____________________________________________________________
consensus             CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
 
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rJMFF035E19+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF010I10+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMSF028E22+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMSF018O14+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF048K15+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF005P06+          GAANCTGCCAGTATTAACACATTTTCTTGGGGAGTAGNTAATCGTGGTTGTTCAATTCGT
JMFN042F04-           GAAACTGCCA                                                  
rJMFF051K07+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF022F17+          GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
                      ____________________________________________________________
consensus             GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
 
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rJMFF035E19+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF010I10+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMSF028E22+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMSF018O14+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF048K15+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF005P06+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCNTGCTTCA
rJMFF051K07+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF022F17+          GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
                      ____________________________________________________________
consensus             GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
 
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rJMFF035E19+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF010I10+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMSF028E22+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMSF018O14+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF048K15+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF005P06+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF051K07+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF022F17+          AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
                      ____________________________________________________________
consensus             AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
 
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rJMFF035E19+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMFF010I10+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMSF028E22+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMSF018O14+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAA       
rJMFF048K15+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMFF005P06+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAA       
rJMFF051K07+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAA       
rJMFF022F17+          ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
                      ____________________________________________________________
consensus             ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
 
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rJMFF035E19+          TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMFF010I10+          TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMSF028E22+          TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMFF048K15+          TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMFF022F17+          TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
                      ____________________________________________________________
consensus             TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
 
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rJMFF035E19+          TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMFF010I10+          TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMSF028E22+          TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMFF048K15+          TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMFF022F17+          TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
                      ____________________________________________________________
consensus             TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
 
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rJMFF035E19+          GT                                                          
rJMFF010I10+          GTTTGAACATTATCTCTTGCTG                                      
rJMSF028E22+          GTTTGAACATT                                                 
rJMFF048K15+          GTTTGAACATTATCTCTTGCTGTCAGTGGTCACTGACTGCATCC                
rJMFF022F17+          GTTTGAACATTATCTCTTGCTGTCAGTGGTCACTGACTGCATCCTTAGAAGTGGCAATTA
                      ____________________________________________________________
consensus             GTTTGAACATTATCTCTTGCTGTCAGTGGTCACTGACTGCATCCTTAGAAGTGGCAATTA