Contig 002582:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C04Sequence535009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]775002582 (10)ref|XP_009621898.1|1e-92PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF022E18Sequence519009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]729002582 (10)ref|XP_009621898.1|1e-30PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF022J04Sequence541009455 (5)ref|XP_006349328.1|2e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]695002582 (10)ref|XP_009621898.1|2e-65PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF028F08Sequence521009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]679002582 (10)ref|XP_009621898.1|6e-76PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF033P08Sequence452012921 (12)ref|XP_006359700.1|5e-39PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Solanum 748002582 (10)ref|XP_009621898.1|3e-71PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF035A07Sequence686002582 (10)ref|XP_009621898.1|1e-116PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform699002582 (10)ref|XP_009621898.1|2e-72PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF036D15Sequence700009455 (5)ref|XP_006349328.1|2e-29PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]759002582 (10)ref|XP_009621898.1|3e-68PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF047C07Sequence632002582 (10)ref|XP_009621898.1|1e-51PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform587002582 (10)ref|XP_009621898.1|7e-52PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform

Alignment

This contig is upended


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JMSF035A07-                                       GGGAATAAGTATAACAAGGAAGATTTTAGTAC
                      ____________________________________________________________
consensus                                         GGGAATAAGTATAACAAGGAAGATTTTAGTAC
 
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JMSF035A07-           TGAGTATGATTCTGCAAAATTCTATGTTATCAAGTCATACAGCGAAGATGACATTCACAA
                      ____________________________________________________________
consensus             TGAGTATGATTCTGCAAAATTCTATGTTATCAAGTCATACAGCGAAGATGACATTCACAA
 
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JMSF035A07-           GTCTGTCAAATATGATGTTTGGTCAAGCACTCCAAACGGCAACAAAAAATTGGAGAATGC
rJMFF008C04+                                                    CAAAAAATTGGAGAATGC
                      ____________________________________________________________
consensus             GTCTGTCAAATATGATGTTTGGTCAAGCACTCCAAACGGCAACAAAAAATTGGAGAATGC
 
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JMSF035A07-           TTTTGGTGATGCTGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
rJMFF033P08+                      TGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
rJMFF008C04+          TTTTGGTGATGCTGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
                      ____________________________________________________________
consensus             TTTTGGTGATGCTGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
 
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JMSF035A07-           C-TTTTCTGTAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF033P08+          CTTTTTCTGTAAACCGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF028F08+                   TAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF008C04+          C-TTTTCTGTAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMSF035A07+                   TAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF022J04+                                     TTTTGGGGTGTAGCAGAGATGACAGGGCCAGGT
rJMSF036D15+                                GACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
                      ____________________________________________________________
consensus             C-TTTTCTGTAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
 
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JMSF035A07-           GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF033P08+          GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF028F08+          GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF008C04+          GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMSF035A07+          GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF022J04+          GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
JMSF047C07-                                                 AGTGGAGTGGGTTCTTCCCAGT
rJMSF047C07+                                                AGTGGAGTGGGTTCTTCCCAGT
rJMSF036D15+          GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
                      ____________________________________________________________
consensus             GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
 
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JMSF035A07-           GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF033P08+          GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF028F08+          GAAGTGGCACATAGTTAAAGATGTACCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF008C04+          GAAGTGGCACATAGTTAAAGATGTACCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMSF035A07+          GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF022J04+          GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
JMSF047C07-           GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMSF047C07+          GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMSF036D15+          GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF022E18+                                                             CCTTGAAAA
                      ____________________________________________________________
consensus             GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
 
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JMSF035A07-           CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF033P08+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF028F08+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF008C04+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMSF035A07+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF022J04+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
JMSF047C07-           CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMSF047C07+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMSF036D15+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF022E18+          CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
                      ____________________________________________________________
consensus             CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
 
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JMSF035A07-           CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF033P08+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF028F08+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF008C04+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMSF035A07+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF022J04+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
JMSF047C07-           CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMSF047C07+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMSF036D15+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF022E18+          CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
                      ____________________________________________________________
consensus             CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
 
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JMSF035A07-           TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF033P08+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF028F08+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF008C04+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMSF035A07+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF022J04+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
JMSF047C07-           TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMSF047C07+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMSF036D15+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF022E18+          TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
                      ____________________________________________________________
consensus             TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
 
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JMSF035A07-           TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF033P08+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF028F08+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF008C04+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMSF035A07+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF022J04+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
JMSF047C07-           TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMSF047C07+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMSF036D15+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF022E18+          TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
                      ____________________________________________________________
consensus             TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
 
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JMSF035A07-           AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGG   
rJMFF033P08+          AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF028F08+          AAACGAGGAAAAATCGTTGAAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF008C04+          AAACGAGGAAAAATCGTTGAAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMSF035A07+          AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF022J04+          AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
JMSF047C07-           AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMSF047C07+          AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMSF036D15+          AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF022E18+          AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
                      ____________________________________________________________
consensus             AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
 
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rJMFF033P08+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF028F08+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF008C04+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMSF035A07+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF022J04+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
JMSF047C07-           CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMSF047C07+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMSF036D15+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF022E18+          CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
                      ____________________________________________________________
consensus             CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
 
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rJMFF033P08+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF028F08+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF008C04+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMSF035A07+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF022J04+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
JMSF047C07-           GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMSF047C07+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMSF036D15+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF022E18+          GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
                      ____________________________________________________________
consensus             GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
 
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rJMFF033P08+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTNTGGGTTGGTGTTCCTT
rJMFF028F08+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMFF008C04+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMSF035A07+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMFF022J04+          CCATGTTTCTGTTTGCTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
JMSF047C07-           CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMSF047C07+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMSF036D15+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMFF022E18+          CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
                      ____________________________________________________________
consensus             CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
 
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rJMFF033P08+          TCCAACCCTTTAAGAAGAAAGAAATGCAA                               
rJMFF028F08+          TCCAACCCTTTAAGAAGAAAGAAATGCAAT                              
rJMFF008C04+          TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATG                    
rJMSF035A07+          TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGT                
rJMFF022J04+          TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAAT                     
JMSF047C07-           TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
rJMSF047C07+          TCCAACCCTTTAAGAAGAAAGAAAT                                   
rJMSF036D15+          TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
rJMFF022E18+          TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
                      ____________________________________________________________
consensus             TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
 
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JMSF047C07-           A                                                           
rJMSF036D15+          ATCAAGTTTTTTATCTTCTTCATTTTGTTCATTTGATAGCCATGTTTATTGTTTTCTCCA
rJMFF022E18+          ATCAAGTTTTTTATCTTCTTCATTTTGTTCATTTGATAGCCATGTTTATTGTTTTCTCCA
                      ____________________________________________________________
consensus             ATCAAGTTTTTTATCTTCTTCATTTTGTTCATTTGATAGCCATGTTTATTGTTTTCTCCA
 
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rJMSF036D15+          TT                                                          
rJMFF022E18+          TTTGTGTCTGCAAATCCACAATGAAGGCCAAGACATGCCTTTTCTATTTTGGGTGTACCC
                      ____________________________________________________________
consensus             TTTGTGTCTGCAAATCCACAATGAAGGCCAAGACATGCCTTTTCTATTTTGGGTGTACCC
 
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rJMFF022E18+          AGAGTTTTTACTGTCGGATACTGTCTAATTCCTTCACTGAATTGTAGTTACCTTTTCGAG
                      ____________________________________________________________
consensus             AGAGTTTTTACTGTCGGATACTGTCTAATTCCTTCACTGAATTGTAGTTACCTTTTCGAG