Contig 002582:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C04Sequence535009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]775002582 (10)ref|XP_009621898.1|1e-92PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF022E18Sequence519009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]729002582 (10)ref|XP_009621898.1|1e-30PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF022J04Sequence541009455 (5)ref|XP_006349328.1|2e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]695002582 (10)ref|XP_009621898.1|2e-65PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF028F08Sequence521009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]679002582 (10)ref|XP_009621898.1|6e-76PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF033P08Sequence452012921 (12)ref|XP_006359700.1|5e-39PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Solanum 748002582 (10)ref|XP_009621898.1|3e-71PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF035A07Sequence686002582 (10)ref|XP_009621898.1|1e-116PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform699002582 (10)ref|XP_009621898.1|2e-72PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF036D15Sequence700009455 (5)ref|XP_006349328.1|2e-29PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]759002582 (10)ref|XP_009621898.1|3e-68PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF047C07Sequence632002582 (10)ref|XP_009621898.1|1e-51PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform587002582 (10)ref|XP_009621898.1|7e-52PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF035A07- GGGAATAAGTATAACAAGGAAGATTTTAGTAC
                      ____________________________________________________________
consensus GGGAATAAGTATAACAAGGAAGATTTTAGTAC
 
. : . : . : . : . : . :
JMSF035A07- TGAGTATGATTCTGCAAAATTCTATGTTATCAAGTCATACAGCGAAGATGACATTCACAA
                      ____________________________________________________________
consensus TGAGTATGATTCTGCAAAATTCTATGTTATCAAGTCATACAGCGAAGATGACATTCACAA
 
. : . : . : . : . : . :
JMSF035A07- GTCTGTCAAATATGATGTTTGGTCAAGCACTCCAAACGGCAACAAAAAATTGGAGAATGC
rJMFF008C04+ CAAAAAATTGGAGAATGC
                      ____________________________________________________________
consensus GTCTGTCAAATATGATGTTTGGTCAAGCACTCCAAACGGCAACAAAAAATTGGAGAATGC
 
. : . : . : . : . : . :
JMSF035A07- TTTTGGTGATGCTGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
rJMFF033P08+ TGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
rJMFF008C04+ TTTTGGTGATGCTGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
                      ____________________________________________________________
consensus TTTTGGTGATGCTGAAGGAAAAGCAAGCGAGACAGGCACAGAATGCCCAGTATTCCTCTT
 
. : . : . : . : . : . :
JMSF035A07- C-TTTTCTGTAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF033P08+ CTTTTTCTGTAAACCGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF028F08+ TAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF008C04+ C-TTTTCTGTAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMSF035A07+ TAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
rJMFF022J04+ TTTTGGGGTGTAGCAGAGATGACAGGGCCAGGT
rJMSF036D15+ GACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
                      ____________________________________________________________
consensus C-TTTTCTGTAAA-CGGGAGTGGACAATTTTTGGGTGTAGCAGAGATGACAGGG-CAGGT
 
. : . : . : . : . : . :
JMSF035A07- GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF033P08+ GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF028F08+ GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF008C04+ GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMSF035A07+ GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
rJMFF022J04+ GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
JMSF047C07- AGTGGAGTGGGTTCTTCCCAGT
rJMSF047C07+ AGTGGAGTGGGTTCTTCCCAGT
rJMSF036D15+ GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
                      ____________________________________________________________
consensus GGATTTTAACCAGAAAAAGGACTTTTGGCAACTCGATAAGTGGAGTGGGTTCTTCCCAGT
 
. : . : . : . : . : . :
JMSF035A07- GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF033P08+ GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF028F08+ GAAGTGGCACATAGTTAAAGATGTACCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF008C04+ GAAGTGGCACATAGTTAAAGATGTACCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMSF035A07+ GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF022J04+ GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
JMSF047C07- GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMSF047C07+ GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMSF036D15+ GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
rJMFF022E18+ CCTTGAAAA
                      ____________________________________________________________
consensus GAAGTGGCACATAGTTAAAGATGTCCCGAACACACAGTTGAGGCACATTATCCTTGAAAA
 
. : . : . : . : . : . :
JMSF035A07- CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF033P08+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF028F08+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF008C04+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMSF035A07+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF022J04+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
JMSF047C07- CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMSF047C07+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMSF036D15+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
rJMFF022E18+ CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
                      ____________________________________________________________
consensus CAATGACAACAAGCCTGTAACTTACAGCCGAGACACTCAAGAGGTTGGATTGAAGGAAGG
 
. : . : . : . : . : . :
JMSF035A07- CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF033P08+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF028F08+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF008C04+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMSF035A07+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF022J04+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
JMSF047C07- CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMSF047C07+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMSF036D15+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
rJMFF022E18+ CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
                      ____________________________________________________________
consensus CTTGGAAATGCTTAACATCTTCAAGTCTTACTCCGAGAAGTCCTCACTGTTGGATGACTT
 
. : . : . : . : . : . :
JMSF035A07- TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF033P08+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF028F08+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF008C04+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMSF035A07+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF022J04+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
JMSF047C07- TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMSF047C07+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMSF036D15+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
rJMFF022E18+ TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
                      ____________________________________________________________
consensus TGACTTCTATGAGGATAGAGAAAATTTGATTAAGGCCAGCAGGAGTTTTAAGACAGGATC
 
. : . : . : . : . : . :
JMSF035A07- TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF033P08+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF028F08+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF008C04+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMSF035A07+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF022J04+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
JMSF047C07- TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMSF047C07+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMSF036D15+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
rJMFF022E18+ TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
                      ____________________________________________________________
consensus TGAAGCAGGTGCATTCCAGAATCGGGACCCTCATAAGCAATTCAATGAAGGGGAAAAGGA
 
. : . : . : . : . : . :
JMSF035A07- AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGG
rJMFF033P08+ AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF028F08+ AAACGAGGAAAAATCGTTGAAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF008C04+ AAACGAGGAAAAATCGTTGAAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMSF035A07+ AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF022J04+ AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
JMSF047C07- AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMSF047C07+ AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMSF036D15+ AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
rJMFF022E18+ AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
                      ____________________________________________________________
consensus AAACGAGGAAAAATCGTTGGAAACTGGTATTACTGATTCTGCTTCCTCTCTCATTGGTCT
 
. : . : . : . : . : . :
rJMFF033P08+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF028F08+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF008C04+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMSF035A07+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF022J04+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
JMSF047C07- CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMSF047C07+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMSF036D15+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
rJMFF022E18+ CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
                      ____________________________________________________________
consensus CACCGAAAACCTTTCTGTAAACGCCTAATGAATCAACCGGAGAATGTGGTGGCTTGAAGG
 
. : . : . : . : . : . :
rJMFF033P08+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF028F08+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF008C04+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMSF035A07+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF022J04+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
JMSF047C07- GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMSF047C07+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMSF036D15+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
rJMFF022E18+ GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
                      ____________________________________________________________
consensus GGGACTCAAGTTGGGGTGAACTGCACCATTTCTTGTGTTGTTGTTCAGTTTTATGAATTA
 
. : . : . : . : . : . :
rJMFF033P08+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTNTGGGTTGGTGTTCCTT
rJMFF028F08+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMFF008C04+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMSF035A07+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMFF022J04+ CCATGTTTCTGTTTGCTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
JMSF047C07- CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMSF047C07+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMSF036D15+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
rJMFF022E18+ CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
                      ____________________________________________________________
consensus CCATGTTTCTGTTTGTTGTTATTTTATCAGTTTAGCCATGTTTCTGGGTTGGTGTTCCTT
 
. : . : . : . : . : . :
rJMFF033P08+ TCCAACCCTTTAAGAAGAAAGAAATGCAA
rJMFF028F08+ TCCAACCCTTTAAGAAGAAAGAAATGCAAT
rJMFF008C04+ TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATG
rJMSF035A07+ TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGT
rJMFF022J04+ TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAAT
JMSF047C07- TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
rJMSF047C07+ TCCAACCCTTTAAGAAGAAAGAAAT
rJMSF036D15+ TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
rJMFF022E18+ TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
                      ____________________________________________________________
consensus TCCAACCCTTTAAGAAGAAAGAAATGCAATTTAGTTAATGTTGTTGTTGTCTGGTTTGCT
 
. : . : . : . : . : . :
JMSF047C07- A
rJMSF036D15+ ATCAAGTTTTTTATCTTCTTCATTTTGTTCATTTGATAGCCATGTTTATTGTTTTCTCCA
rJMFF022E18+ ATCAAGTTTTTTATCTTCTTCATTTTGTTCATTTGATAGCCATGTTTATTGTTTTCTCCA
                      ____________________________________________________________
consensus ATCAAGTTTTTTATCTTCTTCATTTTGTTCATTTGATAGCCATGTTTATTGTTTTCTCCA
 
. : . : . : . : . : . :
rJMSF036D15+ TT
rJMFF022E18+ TTTGTGTCTGCAAATCCACAATGAAGGCCAAGACATGCCTTTTCTATTTTGGGTGTACCC
                      ____________________________________________________________
consensus TTTGTGTCTGCAAATCCACAATGAAGGCCAAGACATGCCTTTTCTATTTTGGGTGTACCC
 
. : . : . : . : . : . :
rJMFF022E18+ AGAGTTTTTACTGTCGGATACTGTCTAATTCCTTCACTGAATTGTAGTTACCTTTTCGAG
                      ____________________________________________________________
consensus AGAGTTTTTACTGTCGGATACTGTCTAATTCCTTCACTGAATTGTAGTTACCTTTTCGAG