Contig 002569:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+                               TGAAAGAAAACGTTTGATAGCCCTTGCGTAAGGCAGAGA
                      ____________________________________________________________
consensus                                  TGAAAGAAAACGTTTGATAGCCCTTGCGTAAGGCAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          AAGAGGAAGAGAGAAGAGCAAGGGAAAAAATTCGTCAAAAGTTAGAAGAGGATAAGGCAG
rJMFF018F10+                                         TCGTCAAAAGTTAGAAGAGGATAAGGCAG
                      ____________________________________________________________
consensus             AAGAGGAAGAGAGAAGAGCAAGGGAAAAAATTCGTCAAAAGTTAGAAGAGGATAAGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          AAAGACGACGCAAACTTGGTTTGCCTCCTGAAGATCCTGCTCCAAAACCTTCTGAACCAG
rJMFF018F10+          AAAGACGACGCAAACTTGGTTTGCNTCCTGAAGATCNTGCTCCAAAACCTTCTGAACCAG
                      ____________________________________________________________
consensus             AAAGACGACGCAAACTTGGTTTGCCTCCTGAAGATCCTGCTCCAAAACCTTCTGAACCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          TAGTAGAGGAAAAGAAGAGCTCACTGCCTGTCAGACCAGCTACAAAGGCAGAGCAAATGA
rJMFF018F10+          TAGTAGAGGAAAAGAAGAGCTCACTGCCTGTCAGACCAGCTACAAAGGCAGAGCAAATGA
                      ____________________________________________________________
consensus             TAGTAGAGGAAAAGAAGAGCTCACTGCCTGTCAGACCAGCTACAAAGGCAGAGCAAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          GGGAGTGCCTGCGTACACTTAAGCAGAGCCACAAGGATGACGAGGCTAAAGTGAAGACTG
rJMFF018F10+          GGGAGTGCCTGCGTACACTTAAGCAGAGCCACAAGGATGACGAGGCTAAAGTGAAGACTG
                      ____________________________________________________________
consensus             GGGAGTGCCTGCGTACACTTAAGCAGAGCCACAAGGATGACGAGGCTAAAGTGAAGACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          CATTTAATACACTACTAACTTTNGCAAAGAATGTNGCAACAAATCCAAATGAGGAGAAGT
rJMFF018F10+          CATTTAATACACTACTAACTTTTGCAAAGAATGTTGCAACAAATCCAAATGAGGAGAAGT
                      ____________________________________________________________
consensus             CATTTAATACACTACTAACTTTTGCAAAGAATGTTGCAACAAATCCAAATGAGGAGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          TCCGGAAAATTAGACTCAGTAATCCTGCAATCCAGGAAAGAGTTGGAAAATTGAAGGGGG
rJMFF018F10+          TCCGGAAAATTAGACTCAGTAATCCTGCAATCCAGGAAAGAGTTGGAAAATTGAAGGGGG
                      ____________________________________________________________
consensus             TCCGGAAAATTAGACTCAGTAATCCTGCAATCCAGGAAAGAGTTGGAAAATTGAAGGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          GTGTGGAGTTCCTTGAGCTTCTTGGATTTGAGAAAATTGAAGGTGGAGAGTTCTTGTATC
rJMFF018F10+          GTGTGGAGTTCCTTGAGCTTCTTGGATTTGAGAAAATTGAAGGTGGAGAGTTCTTGTATC
                      ____________________________________________________________
consensus             GTGTGGAGTTCCTTGAGCTTCTTGGATTTGAGAAAATTGAAGGTGGAGAGTTCTTGTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          TTCCAAGTGATAAAGTAGACATGGCTGTGCTTCACTCTGCTGGGACCGAGTTGAACAGTG
rJMFF018F10+          TTCCAAGTGATAAAGTAGACATGGCTGTGCTTCACTCTGCTGGGACCGAGTTGAACAGTG
                      ____________________________________________________________
consensus             TTCCAAGTGATAAAGTAGACATGGCTGTGCTTCACTCTGCTGGGACCGAGTTGAACAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          CCATCAATAACCCCTTCTTTGGAGTCCTTTGATCCTTACATTAGCTCTGCTGAAACATTN
rJMFF018F10+          CCATCAATAACCCCTTCTTTGGAGTCCTTTGATCCTTACATTAGCTCTGCTGAAACATTC
                      ____________________________________________________________
consensus             CCATCAATAACCCCTTCTTTGGAGTCCTTTGATCCTTACATTAGCTCTGCTGAAACATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          TAAACTTTGTCAAACCTAATATACAGGAATATGTCGAGTTTTCTCTTGGTTTTGAAAAGG
rJMFF018F10+          TAAACTTTGTCAAACCTAATATACAGGAATATGTCGAGTTTTCTCTTGGTTTTGAAAAGG
                      ____________________________________________________________
consensus             TAAACTTTGTCAAACCTAATATACAGGAATATGTCGAGTTTTCTCTTGGTTTTGAAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          TACATNGGAGGTGGGAAGGGAAAGGAAGGGATATGTTCNGGATAATTGGATTTCATTTTG
rJMFF018F10+          TACATTGGAGGTGGGAAGGGAAAGGAAGGGATATGTTCTGGATAATTGGATTTCATTTTG
                      ____________________________________________________________
consensus             TACATTGGAGGTGGGAAGGGAAAGGAAGGGATATGTTCTGGATAATTGGATTTCATTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          CCGTTAGACTATGTTTGGAAACANTTATAGTTTTTCTTTATCATATTTGGTTTTAGAATT
rJMFF018F10+          CCGTTAGACTATGTTTGGAAACAATTATAGTTTTTCTTTATCATATTTAGTTTTAGAATT
                      ____________________________________________________________
consensus             CCGTTAGACTATGTTTGGAAACAATTATAGTTTTTCTTTATCATATTTGGTTTTAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003A05+          ATGCCCCCAAA                                                 
rJMFF018F10+          ATGCCCCCAAAGGATCATTCTCCAATTGAGAGTGTGGATATATTTGAGGAAGTATTTTGG
                      ____________________________________________________________
consensus             ATGCCCCCAAAGGATCATTCTCCAATTGAGAGTGTGGATATATTTGAGGAAGTATTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF018F10+          GTAATGTTTTTTTATTTGTTTCAACATTTTAACTGTATTGGAGAACCAAGTTAAATTCAG
                      ____________________________________________________________
consensus             GTAATGTTTTTTTATTTGTTTCAACATTTTAACTGTATTGGAGAACCAAGTTAAATTCAG