Contig 002568:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+                                                                    TC
                      ____________________________________________________________
consensus                                                                       TC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          TCTGGGAAAGTACTCGGCCCTGCAAGAAATTAGGTGGGTTAGAGAGAATGAATTGCACTG
                      ____________________________________________________________
consensus             TCTGGGAAAGTACTCGGCCCTGCAAGAAATTAGGTGGGTTAGAGAGAATGAATTGCACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          TCCAAGTCTCCAGTACTATTATATGGGCTATTACATCCATTCCTGCAACAAAATGACATA
                      ____________________________________________________________
consensus             TCCAAGTCTCCAGTACTATTATATGGGCTATTACATCCATTCCTGCAACAAAATGACATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          TAAAGCAGCTTACAGCCCATCCGAGCTTCTCTGCCCTCTTCGTTATACGTGGGTTCCATT
rJMFF018D24+                                                TTCGTTATACGTGGGTTCCATT
                      ____________________________________________________________
consensus             TAAAGCAGCTTACAGCCCATCCGAGCTTCTCTGCCCTCTTCGTTATACGTGGGTTCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          TGAGATTGCGAAACCATTGCTTGATAGAAAACCTTACGTGGCTCTCTCTGATTTTACCAC
rJMFF018D24+          TGAGATTGCGAAACCATTGCTTGATAGAAAACCTTACGTGGCTCTCTCTGATTTTACCAC
                      ____________________________________________________________
consensus             TGAGATTGCGAAACCATTGCTTGATAGAAAACCTTACGTGGCTCTCTCTGATTTTACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          CCAAAATGGTGGCTCATTGCCATCCAGTGTGCATGATAGTTATGTTGAGGAACAACCTGA
rJMFF018D24+          CCAAAATGGTGGCTCATTGCCATCCAGTGTGCATGATAGTTATGTTGAGGAACAACCTGA
                      ____________________________________________________________
consensus             CCAAAATGGTGGCTCATTGCCATCCAGTGTGCATGATAGTTATGTTGAGGAACAACCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          TGATCACGCTCCAGGGGGTTCAAATGATATCTTTGTACATGCGGATGAGGACATGACTGA
rJMFF018D24+          TGATCACGCTCCAGGGGGTTCAAATGATATCTTTGTACATGCGGATGAGGACATGACTGA
                      ____________________________________________________________
consensus             TGATCACGCTCCAGGGGGTTCAAATGATATCTTTGTACATGCGGATGAGGACATGACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          ATATGATTCCGAAGATTCTGATGATGAAGAGGACACAGTACCAAGTGGCAACGTGTCAGA
rJMFF018D24+          ATATGATTCCGAAGATTCTGATGATGAAGAGGACACAGTACCAAGTGGCAACGTGTCAGA
                      ____________________________________________________________
consensus             ATATGATTCCGAAGATTCTGATGATGAAGAGGACACAGTACCAAGTGGCAACGTGTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          TGATCTGGAAGATGGAGACGTTGGGGATGTTCTGATTGGGTTGACCGGAGTTCGTTTGAG
rJMFF018D24+          TGATCTGGAAGATGGAGACGTTGGGGATGTTCTGATTGGGTTGACCGGAGTTCGTTTGAG
                      ____________________________________________________________
consensus             TGATCTGGAAGATGGAGACGTTGGGGATGTTCTGATTGGGTTGACCGGAGTTCGTTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          GTTCAAGGATGTGCAACACGCTTTCGGTCCCAGAGAAAGGCAGCACATGACAACACAATT
rJMFF018D24+          GTTCAAGGAAGTGCAACACGCTTTCGGTCCCAGAGAAAGGCAGCACATGACAACACAATT
                      ____________________________________________________________
consensus             GTTCAAGGATGTGCAACACGCTTTCGGTCCCAGAGAAAGGCAGCACATGACAACACAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          GCAAAGATACATGAGAGCTGTGGGAAGAGAACTCTCTGGGCACATGGTTTATTCATTGGG
rJMFF018D24+          GCAAAGATACATGAGAGCTGTGGGAAGAGAACTCTCTGGGCACATGGTTTATTCATTGGG
                      ____________________________________________________________
consensus             GCAAAGATACATGAGAGCTGTGGGAAGAGAACTCTCTGGGCACATGGTTTATTCATTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          CTGATAACAGTCTTGTCATCTACAAGTTGAGTTTTCACCATTTTATTTTTACATCATTGC
rJMFF018D24+          CTGATAACAGTCTTGTCATCTACAAGTTGAGTTTTCACCATTTTATTTTTACATCATTGC
                      ____________________________________________________________
consensus             CTGATAACAGTCTTGTCATCTACAAGTTGAGTTTTCACCATTTTATTTTTACATCATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J09+          AATTTAGCTTATACTGGTG                                         
rJMFF018D24+          AATTTAGCTTATACTGGTGTAACCCCATACTTCAATTTCATAAATTTATGGTCTTCTCCA
                      ____________________________________________________________
consensus             AATTTAGCTTATACTGGTGTAACCCCATACTTCAATTTCATAAATTTATGGTCTTCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF018D24+          ACATTTGAGCTCTAAATGTTTCCATTTTCAAGTGAATAGACTTGTCATTTCATTATGGCT
                      ____________________________________________________________
consensus             ACATTTGAGCTCTAAATGTTTCCATTTTCAAGTGAATAGACTTGTCATTTCATTATGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF018D24+          CCATTATTGCATTACAGTGGGGCAAATTGTACACTTGTATTGTGGACCACTAATAAATAC
                      ____________________________________________________________
consensus             CCATTATTGCATTACAGTGGGGCAAATTGTACACTTGTATTGTGGACCACTAATAAATAC