Contig 002564:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002B09Sequence364002564 (5)
JMCP007F12Sequence375002564 (5)
JMCP008E12Sequence273002564 (5)
JMCP017D03Sequence363002564 (5)
JMFF017E05Sequence581011522 (5)ref|XP_009805065.1|2e-47PREDICTED: zinc finger CCCH domain-containing protein 29-like [Nicotiana sylves687002564 (5)ref|XP_006355652.1|8e-45PREDICTED: zinc finger CCCH domain-containing protein 29-like [Solanum tuberosu

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP007F12+ CGA
                      ____________________________________________________________
consensus CGA
 
. : . : . : . : . : . :
rJMCP017D03+ AGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
rJMCP002B09+ AGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
JMCP007F12+ CAAGAGATTGTAGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
rJMFF017E05- TTTATTTCATATTGTTGATTACATTGG
                      ____________________________________________________________
consensus CAAGAGATTGTAGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
 
. : . : . : . : . : . :
rJMCP017D03+ ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
rJMCP002B09+ ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
JMCP007F12+ ATGATCCGAAGAAAGACTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
JMCP008E12+ TCTGTTTTTT
rJMFF017E05- ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
                      ____________________________________________________________
consensus ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
 
. : . : . : . : . : . :
rJMCP017D03+ CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
rJMCP002B09+ CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
JMCP007F12+ CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
JMCP008E12+ CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
rJMFF017E05- CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
                      ____________________________________________________________
consensus CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
 
. : . : . : . : . : . :
rJMCP017D03+ GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
rJMCP002B09+ GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
JMCP007F12+ GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
JMCP008E12+ GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
rJMFF017E05- GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
                      ____________________________________________________________
consensus GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
 
. : . : . : . : . : . :
rJMCP017D03+ AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
rJMCP002B09+ AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
JMCP007F12+ AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
JMCP008E12+ AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
rJMFF017E05- AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
                      ____________________________________________________________
consensus AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
 
. : . : . : . : . : . :
rJMCP017D03+ AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
rJMCP002B09+ AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
JMCP007F12+ AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
JMCP008E12+ AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
rJMFF017E05- AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
                      ____________________________________________________________
consensus AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
 
. : . : . : . : . : . :
rJMCP017D03+ ACGGAGTCATGA
rJMCP002B09+ ACGGAGTCATGA
JMCP007F12+ tgGGAGTCATGA
JMCP008E12+ ACGGAGTCATGAACTCTGCGTT
rJMFF017E05- ACGGAGTCATGAACTCTGCGTTTCTGCTCTGATGACGAAACGTCTTTCACCAACGAATGA
                      ____________________________________________________________
consensus ACGGAGTCATGAACTCTGCGTTTCTGCTCTGATGACGAAACGTCTTTCACCAACGAATGA
 
. : . : . : . : . : . :
rJMFF017E05- ACCCACGAGACGTCCGGCTCGTCCGAGTGAGATGACGGGAGGAATGATGTTCGGGTTGAG
                      ____________________________________________________________
consensus ACCCACGAGACGTCCGGCTCGTCCGAGTGAGATGACGGGAGGAATGATGTTCGGGTTGAG
 
. : . : . : . : . : . :
rJMFF017E05- GCGGGGCTTCCGTTTCGGGTGGCAAACGAGGCAGACTTCTTCAGCTTGTTTAGCTCTTCG
                      ____________________________________________________________
consensus GCGGGGCTTCCGTTTCGGGTGGCAAACGAGGCAGACTTCTTCAGCTTGTTTAGCTCTTCG
 
. : . : . : . : . : . :
rJMFF017E05- CCGTTGAAGCCCCAGTCCAGTTTCCCGTCGGGAGAGCCCCAGTCCGACATTTTGGAGGTC
                      ____________________________________________________________
consensus CCGTTGAAGCCCCAGTCCAGTTTCCCGTCGGGAGAGCCCCAGTCCGACATTTTGGAGGTC
 
. : . : . : . : . : . :
rJMFF017E05- ATCAAGGGCGGGGAGTTGGAAGAGCGGGGGATGACTCCACCCCGGTCTATAAAACTGTGG
                      ____________________________________________________________
consensus ATCAAGGGCGGGGAGTTGGAAGAGCGGGGGATGACTCCACCCCGGTCTATAAAACTGTGG
 
. : . : . : . : . : . :
rJMFF017E05- CTGCGTTTCGCGAAGGCAGCAGACCTCGAGTTCATGACTGCGGCTGCGACTGCTGCCGAA
                      ____________________________________________________________
consensus CTGCGTTTCGCGAAGGCAGCAGACCTCGAGTTCATGACTGCGGCTGCGACTGCTGCCGAA