Contig 002564:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMCP007F12+                                                                    CGA
                      ____________________________________________________________
consensus                                                                      CGA
 
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rJMCP017D03+                     AGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
rJMCP002B09+                     AGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
JMCP007F12+           CAAGAGATTGTAGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
rJMFF017E05-                                           TTTATTTCATATTGTTGATTACATTGG
                      ____________________________________________________________
consensus             CAAGAGATTGTAGAAAACATATTCTCTTAAAATTTTATTTCATATTGTTGATTACATTGG
 
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rJMCP017D03+          ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
rJMCP002B09+          ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
JMCP007F12+           ATGATCCGAAGAAAGACTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
JMCP008E12+                                                             TCTGTTTTTT
rJMFF017E05-          ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
                      ____________________________________________________________
consensus             ATGATCCGAAGAAAGATTGAATAAAATACAAGAATACCCAGAAACATTTATCTGTTTTTT
 
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rJMCP017D03+          CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
rJMCP002B09+          CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
JMCP007F12+           CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
JMCP008E12+           CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
rJMFF017E05-          CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
                      ____________________________________________________________
consensus             CTCAAATAAATCTAAAGATCAGTCTGTTCTTCCTATCCATTTCTGTTCCCATCCAACAGG
 
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rJMCP017D03+          GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
rJMCP002B09+          GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
JMCP007F12+           GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
JMCP008E12+           GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
rJMFF017E05-          GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
                      ____________________________________________________________
consensus             GGGGTGTGTTGGTGTAAACTTTGAACCTACTGACTGGCTACATACATCTTAGAACATATT
 
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rJMCP017D03+          AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
rJMCP002B09+          AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
JMCP007F12+           AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
JMCP008E12+           AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
rJMFF017E05-          AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
                      ____________________________________________________________
consensus             AGTAAGAATATGAAAGAATATTACTATTTGATTAGCCATGGAGAAAATGCATGGCCACAG
 
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rJMCP017D03+          AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
rJMCP002B09+          AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
JMCP007F12+           AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
JMCP008E12+           AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
rJMFF017E05-          AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
                      ____________________________________________________________
consensus             AGATTCCCTTAAGCAACCACCTGCTCCTGATCTATGTACATTTGGTCTATCCAGGACGGG
 
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rJMCP017D03+          ACGGAGTCATGA                                                
rJMCP002B09+          ACGGAGTCATGA                                                
JMCP007F12+           tgGGAGTCATGA                                                
JMCP008E12+           ACGGAGTCATGAACTCTGCGTT                                      
rJMFF017E05-          ACGGAGTCATGAACTCTGCGTTTCTGCTCTGATGACGAAACGTCTTTCACCAACGAATGA
                      ____________________________________________________________
consensus             ACGGAGTCATGAACTCTGCGTTTCTGCTCTGATGACGAAACGTCTTTCACCAACGAATGA
 
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rJMFF017E05-          ACCCACGAGACGTCCGGCTCGTCCGAGTGAGATGACGGGAGGAATGATGTTCGGGTTGAG
                      ____________________________________________________________
consensus             ACCCACGAGACGTCCGGCTCGTCCGAGTGAGATGACGGGAGGAATGATGTTCGGGTTGAG
 
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rJMFF017E05-          GCGGGGCTTCCGTTTCGGGTGGCAAACGAGGCAGACTTCTTCAGCTTGTTTAGCTCTTCG
                      ____________________________________________________________
consensus             GCGGGGCTTCCGTTTCGGGTGGCAAACGAGGCAGACTTCTTCAGCTTGTTTAGCTCTTCG
 
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rJMFF017E05-          CCGTTGAAGCCCCAGTCCAGTTTCCCGTCGGGAGAGCCCCAGTCCGACATTTTGGAGGTC
                      ____________________________________________________________
consensus             CCGTTGAAGCCCCAGTCCAGTTTCCCGTCGGGAGAGCCCCAGTCCGACATTTTGGAGGTC
 
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rJMFF017E05-          ATCAAGGGCGGGGAGTTGGAAGAGCGGGGGATGACTCCACCCCGGTCTATAAAACTGTGG
                      ____________________________________________________________
consensus             ATCAAGGGCGGGGAGTTGGAAGAGCGGGGGATGACTCCACCCCGGTCTATAAAACTGTGG
 
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rJMFF017E05-          CTGCGTTTCGCGAAGGCAGCAGACCTCGAGTTCATGACTGCGGCTGCGACTGCTGCCGAA
                      ____________________________________________________________
consensus             CTGCGTTTCGCGAAGGCAGCAGACCTCGAGTTCATGACTGCGGCTGCGACTGCTGCCGAA