| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015L22 | Sequence | 522 | 001744 (3) | ref|XP_009767473.1| | 2e-38 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic | 711 | 002559 (3) | ref|XP_009612668.1| | 8e-62 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic |
| JMFF039K21 | Sequence | 556 | 001744 (3) | ref|XP_009767473.1| | 2e-44 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic | 714 | 002559 (3) | ref|XP_009612668.1| | 9e-50 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic |
| JMSF004K02 | Sequence | 417 | 001744 (3) | ref|XP_009767473.1| | 3e-19 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic | 544 | 002559 (3) | emb|CAN67401.1| | 3e-36 | hypothetical protein VITISV_025967 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF039K21+ TTCCACAATGTGTAAAAACGGGAATGCTGATCTCGCCATTGACATCTTCGAGAAG
rJMFF015L22+ CACAATGTGTAAAAACGGGAATGCTGATCTCGCCATTGACATCTTCGAGAAG
____________________________________________________________
consensus TTCCACAATGTGTAAAAACGGGAATGCTGATCTCGCCATTGACATCTTCGAGAAG
. : . : . : . : . : . :
rJMFF039K21+ CTCTATGAAACGGGCTGCCCCCCTAAACGTGTGTTCTTATAATTCAATGACGGTTGCTTT
rJMFF015L22+ CTCTATGAAACGGGCTG-CCCCCTAAACGTGTGTTCTTATAATTCAATGACGGTTGCTTT
____________________________________________________________
consensus CTCTATGAAACGGGCTGCCCCCCTAAACGTGTGTTCTTATAATTCAATGACGGTTGCTTT
. : . : . : . : . : . :
rJMFF039K21+ GTGGAACAACGGGGAAAGAACCAAGGCTCTGAATGTGGTCTGTCAAATGATACACAAGGG
rJMFF015L22+ GTGGAACAACGGGGAAAGAACCAAGGCTCTGAATGTGGTCTGTCAAATGATACACAAGGG
____________________________________________________________
consensus GTGGAACAACGGGGAAAGAACCAAGGCTCTGAATGTGGTCTGTCAAATGATACACAAGGG
. : . : . : . : . : . :
rJMFF039K21+ GATTGAACCCGACAGGATTACGTATAGTACACTGATATCTTGTTTAATCAAAGACGAGAT
rJMFF015L22+ GATTGAACCCGACAGGATTACGTATAGTACACTGATATCTTGTTTAATCAAAGACGAGAT
____________________________________________________________
consensus GATTGAACCCGACAGGATTACGTATAGTACACTGATATCTTGTTTAATCAAAGACGAGAT
. : . : . : . : . : . :
rJMFF039K21+ GGTGGATGAGGCCATGGCGCTGTTGAAAGAGATGGAAAGACGCGGTTTTCCATCTACAGT
rJMFF015L22+ GGTGGATGAGGCCATGGCGCTGTTGAAAGAGATGGAAAGACGCGGTTTTCCATCTACAGT
____________________________________________________________
consensus GGTGGATGAGGCCATGGCGCTGTTGAAAGAGATGGAAAGACGCGGTTTTCCATCTACAGT
. : . : . : . : . : . :
rJMFF039K21+ CTACATTTACAACAGCGTTCTGCTCGGGCTGTGCAAATCTCGTAGACTAGACGAGGCGAT
rJMSF004K02+ TGCTCGGGCTGTGCAAATCTCGTAGACTAGACGAGGCGAT
rJMFF015L22+ CTACATTTACAACAGCGTTCTGCTCGGGCTGTGCAAATCTCGTAGACTAGACGAGGCGAT
____________________________________________________________
consensus CTACATTTACAACAGCGTTCTGCTCGGGCTGTGCAAATCTCGTAGACTAGACGAGGCGAT
. : . : . : . : . : . :
rJMFF039K21+ TGATATCCTAGAAGAAATGAGTGTAAAGCGCTGCCAGCCAAACGTAAATACTTACATTAT
rJMSF004K02+ TGATATCCTAGAAGAAATGAGTGTAAAGCGCTGCCAGCCAAACGTAAATACTTACATTAT
rJMFF015L22+ TGATATCCTAGAAGAAATGAGTGTAAAGCGCTGCCAGCCAAACGTAAATACTTACATTAT
____________________________________________________________
consensus TGATATCCTAGAAGAAATGAGTGTAAAGCGCTGCCAGCCAAACGTAAATACTTACATTAT
. : . : . : . : . : . :
rJMFF039K21+ ACTAGTTAAAGGCATTGGTTTTCAAGGATGGATAGACGAGGCTATAGAGCTGGCGACCAC
rJMSF004K02+ ACTAGTTAAAGGCATTGGTTTTCAAGGATGGATAGACGAGGCTATAGAGCTGGCGACCAC
rJMFF015L22+ ACTAGTTAAAGGCATTGGTTTTCAAGGATGGATAGACGAGGCTATAGAGCTGGCGACCAC
____________________________________________________________
consensus ACTAGTTAAAGGCATTGGTTTTCAAGGATGGATAGACGAGGCTATAGAGCTGGCGACCAC
. : . : . : . : . : . :
rJMFF039K21+ GCTTCTCCACATGAATGTTATTTCGAAGAAATCAATGTCTCGGATGAGCTTTACCTTCAA
rJMSF004K02+ GCTTCTCCACATGAATGTTATTTCGAAGAAATCAATGTCTCGGATGAGCTTTACCTTCAA
rJMFF015L22+ GCTTCTCCACATGAATGTTATTTCGAAGAAATCAATGTCTCGGATGAGCTTTACCTTCAA
____________________________________________________________
consensus GCTTCTCCACATGAATGTTATTTCGAAGAAATCAATGTCTCGGATGAGCTTTACCTTCAA
. : . : . : . : . : . :
rJMFF039K21+ TGATGCTTAGAATTAGAAAACCTTTTGTTTCAAGATCGAATGGAAAACCGAGAGGTTTCG
rJMSF004K02+ TGATGCTTAGAATTAGAAAACCTTTTGTTTCAAGATCGAATGGAAAACCGAGAGGTTTCG
rJMFF015L22+ TGATGCTTAGAATTAGAAAACCTTTTGTTTCAAGATCGAATGGAAAACCGAGAGGTTTCG
____________________________________________________________
consensus TGATGCTTAGAATTAGAAAACCTTTTGTTTCAAGATCGAATGGAAAACCGAGAGGTTTCG
. : . : . : . : . : . :
rJMFF039K21+ TTCTTCTTCTGTAATGGTGGTTGGAGATTTGTGATTGTCTTTGTTTTGATATCTCAAGAG
rJMSF004K02+ TTCTTCTTCTGTAATGGTGGTTGGAGATTTGTGATNGTCTTTGTTTTGATATCTCAAGAG
rJMFF015L22+ TTCTTCTTCTGTAATGGTGGTTGGAGATTTGTGATTGTCTTTGTTTTGATATCTCAAGAG
____________________________________________________________
consensus TTCTTCTTCTGTAATGGTGGTTGGAGATTTGTGATTGTCTTTGTTTTGATATCTCAAGAG
. : . : . : . : . : . :
rJMFF039K21+ TTTTTGATTCTCCAAGGATTCAAAATACCAAAACCTCTCTTGTTT
rJMSF004K02+ TTTTTGNTTCTCCAAGGATTCAAAATACCAAAACCTCTCTTGTTT
rJMFF015L22+ TTTTTGATTCTCCAAGGATTCAAAATACCAAAACCTCTCTTGTTTTGTAGAAGCAGAAGA
____________________________________________________________
consensus TTTTTGATTCTCCAAGGATTCAAAATACCAAAACCTCTCTTGTTTTGTAGAAGCAGAAGA