Contig 002558:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015E24Sequence549009253 (5)ref|XP_004231043.1|7e-84PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]530002558 (3)ref|XP_009791634.1|2e-57PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]
JMSF013G17Sequence446009253 (5)ref|XP_004231043.1|6e-48PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]473002558 (3)ref|XP_009791634.1|2e-32PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]
JMSF013H03Sequence293009253 (5)ref|XP_004231043.1|4e-18PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]690002558 (3)ref|XP_009791634.1|1e-101PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF013H03+                        GAATGAAAATCTATTTGGATCTGTTGGAGATGATTGCCGGCTAATC
                      ____________________________________________________________
consensus                           GAATGAAAATCTATTTGGATCTGTTGGAGATGATTGCCGGCTAATC
 
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rJMSF013H03+          ATTTGGGACTTGCGCACAAATAAGCCTCAGCACTCTGTTATAGTTCATGAAAAAGAGGTG
                      ____________________________________________________________
consensus             ATTTGGGACTTGCGCACAAATAAGCCTCAGCACTCTGTTATAGTTCATGAAAAAGAGGTG
 
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rJMSF013H03+          AATTATTTATCATTCAATCCATATAATGAGTGGGTTCTTGCCACGGCATCTTCAGACACT
                      ____________________________________________________________
consensus             AATTATTTATCATTCAATCCATATAATGAGTGGGTTCTTGCCACGGCATCTTCAGACACT
 
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rJMSF013G17+                                                          TTAAGTAGTCNT
rJMSF013H03+          ACAGTTGGTCTGTTTGACNTGCGAAAATTGAGCTCTCCNTTGCNTGTCTTAAGTAGTCAT
rJMFF015E24+                    TGTTTGACATGCGAAAATTGAGCTNTCCATTGCATGTNTTAAGTAGTCAT
                      ____________________________________________________________
consensus             ACAGTTGGTCTGTTTGACATGCGAAAATTGAGCTCTCCATTGCATGTCTTAAGTAGTCAT
 
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rJMSF013G17+          NCGGATGAAGTTTTCCAGGTAGAATGGGATCCNAACCNTGAAACNGTGTTAGCNTNTTTT
rJMSF013H03+          ACGGATGAAGTTTTCCNGGTAGAATGGGATCCNAACCNTGAAACNGTGTTAGCATNTTNT
rJMFF015E24+          ACGGATGAAGTTTTCCAGGTAGAATGGGATCCAAACCATGAAACAGTGTTAGCATTTTTT
                      ____________________________________________________________
consensus             ACGGATGAAGTTTTCCAGGTAGAATGGGATCCAAACCATGAAACAGTGTTAGCATTTTTT
 
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rJMSF013G17+          GCTGGCGACNGAAGGTTGATGGTTTGGGNCCTTAATAGGATTNGAGATGAGCNAATGGAG
rJMSF013H03+          GCTGGCGACAGAAGGTTGATGGTTTGGGACCTTAATAGGATTGGAGATGAGCAAATGGAG
rJMFF015E24+          GCTGGCGACAGAAGGTTGATGGTTTGGGACCTTAATAGGATTGGAGATGAGCAAATGGAG
                      ____________________________________________________________
consensus             GCTGGCGACAGAAGGTTGATGGTTTGGGACCTTAATAGGATTGGAGATGAGCAAATGGAG
 
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rJMSF013G17+          GGAGAAGCTGAAGATGGTCCTTTTGAGCTTCTGTTCTCTCANGGAGGTCNCAAGGNTAAG
rJMSF013H03+          GGAGAAGCTGAAGATGGTCCTTNTGAGCTTCTGTTCTCTCATGGAGGTCNCAAGGCTAAG
rJMFF015E24+          GGAGAAGCTGAAGATGGTCCTTTTGAGCTTNTGTTNTNTCATGGAGGTCACAAGGNTAAG
                      ____________________________________________________________
consensus             GGAGAAGCTGAAGATGGTCCTTTTGAGCTTCTGTTCTCTCATGGAGGTCACAAGGCTAAG
 
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rJMSF013G17+          ATATNTGACTTCTCGNGGAACAAGAATGAGCCCNGGGTCATATCAAGTGTAGCNGNGGAC
rJMSF013H03+          ATATNTGACTTCTCGTGGAACAAGAATGAGCCNTGGGTCATATCAAGTGTAGCNGAGGAC
rJMFF015E24+          ATATNTGACTTNTCGTGGAACAAGAATGAGCCATGGGTCATATCAAGTGTAGCAGAGGAC
                      ____________________________________________________________
consensus             ATATNTGACTTCTCGTGGAACAAGAATGAGCCCTGGGTCATATCAAGTGTAGCAGAGGAC
 
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rJMSF013G17+          AATTCTCTTCAGATCTGGCAAANGGCTGAGAGCNTATATCGTGATGATGAAGAATTGCNG
rJMSF013H03+          AATTCTCTTCAGATCTGGCAAATGGCTGAGAGCNTATATCGTGATGATGAAGAATTGCNG
rJMFF015E24+          AATTNTNTTCAGATNTGGCAAATGGNTGAGAGCATATATCGTGATGATGAAGAATTGCAG
                      ____________________________________________________________
consensus             AATTCTCTTCAGATCTGGCAAATGGCTGAGAGCATATATCGTGATGATGAAGAATTGCAG
 
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rJMSF013G17+          ACGGATGGATCNTGAATCTTGAACATGTTTTTTCNGNTGAAACGTTTTTAAAAATGTTGG
rJMSF013H03+          ACGGATGGATCNTGAATCTTGAACNTGTTTTTTCTGTTGAAACGTTTTTAAAAATGTTGG
rJMFF015E24+          ACGGATGGATNTTGAATCTTGAACATGTTTTTTCTGTTGAAACGTTTTTAAAAATGTTGG
                      ____________________________________________________________
consensus             ACGGATGGATCTTGAATCTTGAACATGTTTTTTCTGTTGAAACGTTTTTAAAAATGTTGG
 
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rJMSF013G17+          GGAAGGTCNTGCNTTGTATAATCCTGTTNNGAATATTTTTGGAACCTTGGTTAAGAATGT
rJMSF013H03+          GGAAGGTCNTGCNTTGTATAATCCNGTTCTGAATATTTTTGGAAACNTGGTTAAGAATGT
rJMFF015E24+          GGAAGGTCANGCATTGTATAATCCTGTTNTGAATATTTTTGGAACGTTGGTTAAGAATGT
                      ____________________________________________________________
consensus             GGAAGGTCATGCATTGTATAATCCTGTTCTGAATATTTTTGGAACCTTGGTTAAGAATGT
 
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rJMSF013G17+          GTAA                                                        
rJMSF013H03+          GTAA                                                        
rJMFF015E24+          GTAANGTGTTTTTTTTTTGTTTGTTTCAAACATTAGTTGGGTCTGGGGAAANCACAAGAT
                      ____________________________________________________________
consensus             GTAANGTGTTTTTTTTTTGTTTGTTTCAAACATTAGTTGGGTCTGGGGAAANCACAAGAT