Contig 002556:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014M21Sequence505000726 (7)emb|CDP02087.1|3e-46unnamed protein product [Coffea canephora]787002556 (5)ref|XP_009614932.1|1e-28PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian
JMFF037C09Sequence501000726 (7)emb|CDP02087.1|2e-45unnamed protein product [Coffea canephora]682002556 (5)ref|XP_009614932.1|1e-22PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian
JMSF021C08Sequence642000726 (7)ref|XP_006338583.1|2e-81PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Sol750002556 (5)ref|XP_009614932.1|1e-28PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian
JMSF027B24Sequence625000726 (7)emb|CDP02087.1|4e-90unnamed protein product [Coffea canephora]700002556 (5)ref|XP_009768206.1|2e-26PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian
JMSF037H07Sequence621000726 (7)emb|CDP02087.1|3e-89unnamed protein product [Coffea canephora]735002556 (5)ref|XP_009614932.1|4e-28PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF014M21+ CAAAATTC
                      ____________________________________________________________
consensus CAAAATTC
 
. : . : . : . : . : . :
rJMSF021C08+ AAATGTGAAGAAATTCAAAAAGGGGAAGGAATCAATTGCTGACATT
rJMSF027B24+ GGAATCAATTGCTGACATT
rJMSF037H07+ AAAAGGGGAAGGAATCAATTGCTGACATT
rJMFF014M21+ GATCTTTCTTCAAGAAATGTGAAGAAATTCAAAAAGGGGAAGGAATCAATTGCTGACATT
                      ____________________________________________________________
consensus GATCTTTCTTCAAGAAATGTGAAGAAATTCAAAAAGGGGAAGGAATCAATTGCTGACATT
 
. : . : . : . : . : . :
rJMSF021C08+ GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
rJMSF027B24+ GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
rJMSF037H07+ GTAAGTGATTATGAAGGNGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
rJMFF037C09+ GTCCAAAGCACCGAGAAAATCTCAGAGT
rJMFF014M21+ GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
                      ____________________________________________________________
consensus GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
 
. : . : . : . : . : . :
rJMSF021C08+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMSF027B24+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMSF037H07+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMFF037C09+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMFF014M21+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
                      ____________________________________________________________
consensus GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
 
. : . : . : . : . : . :
rJMSF021C08+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMSF027B24+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMSF037H07+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMFF037C09+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMFF014M21+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
                      ____________________________________________________________
consensus ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
 
. : . : . : . : . : . :
rJMSF021C08+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMSF027B24+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMSF037H07+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMFF037C09+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMFF014M21+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
                      ____________________________________________________________
consensus GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
 
. : . : . : . : . : . :
rJMSF021C08+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMSF027B24+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMSF037H07+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMFF037C09+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMFF014M21+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
                      ____________________________________________________________
consensus GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
 
. : . : . : . : . : . :
rJMSF021C08+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMSF027B24+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMSF037H07+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMFF037C09+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMFF014M21+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
                      ____________________________________________________________
consensus GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
 
. : . : . : . : . : . :
rJMSF021C08+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMSF027B24+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMSF037H07+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMFF037C09+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMFF014M21+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
                      ____________________________________________________________
consensus AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
 
. : . : . : . : . : . :
rJMSF021C08+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMSF027B24+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMSF037H07+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMFF037C09+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMFF014M21+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
                      ____________________________________________________________
consensus AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
 
. : . : . : . : . : . :
rJMSF021C08+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMSF027B24+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMSF037H07+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMFF037C09+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMFF014M21+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
                      ____________________________________________________________
consensus GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
 
. : . : . : . : . : . :
rJMSF021C08+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMSF027B24+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMSF037H07+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMFF037C09+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMFF014M21+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
                      ____________________________________________________________
consensus GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
 
. : . : . : . : . : . :
rJMSF021C08+ TTTATTAATTTTTTT--AAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMSF027B24+ TTTATTAATTTTTTTAAAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMSF037H07+ TTTATTAATTTTTTTAAAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMFF037C09+ TTTATTAATTTTTTT-AAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMFF014M21+ TTTATTAATTTTTTT-AAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
                      ____________________________________________________________
consensus TTTATTAATTTTTTT-AAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
 
. : . : . : . : . : . :
rJMSF021C08+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAAC
rJMSF027B24+ AGATAAGTTGATCGAGATGAT
rJMSF037H07+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAAC
rJMFF037C09+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAACGGACTAT
rJMFF014M21+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAACGGACTATTGTTTCAATGAATAATA
                      ____________________________________________________________
consensus AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAACGGACTATTGTTTCAATGAATAATA