clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF014M21 | Sequence | 505 | 000726 (7) | emb|CDP02087.1| | 3e-46 | unnamed protein product [Coffea canephora] | 787 | 002556 (5) | ref|XP_009614932.1| | 1e-28 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
JMFF037C09 | Sequence | 501 | 000726 (7) | emb|CDP02087.1| | 2e-45 | unnamed protein product [Coffea canephora] | 682 | 002556 (5) | ref|XP_009614932.1| | 1e-22 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
JMSF021C08 | Sequence | 642 | 000726 (7) | ref|XP_006338583.1| | 2e-81 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Sol | 750 | 002556 (5) | ref|XP_009614932.1| | 1e-28 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
JMSF027B24 | Sequence | 625 | 000726 (7) | emb|CDP02087.1| | 4e-90 | unnamed protein product [Coffea canephora] | 700 | 002556 (5) | ref|XP_009768206.1| | 2e-26 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
JMSF037H07 | Sequence | 621 | 000726 (7) | emb|CDP02087.1| | 3e-89 | unnamed protein product [Coffea canephora] | 735 | 002556 (5) | ref|XP_009614932.1| | 4e-28 | PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Nicotian |
This contig is upended
. : . : . : . : . : . :
rJMFF014M21+ CAAAATTC
____________________________________________________________
consensus CAAAATTC
. : . : . : . : . : . :
rJMSF021C08+ AAATGTGAAGAAATTCAAAAAGGGGAAGGAATCAATTGCTGACATT
rJMSF027B24+ GGAATCAATTGCTGACATT
rJMSF037H07+ AAAAGGGGAAGGAATCAATTGCTGACATT
rJMFF014M21+ GATCTTTCTTCAAGAAATGTGAAGAAATTCAAAAAGGGGAAGGAATCAATTGCTGACATT
____________________________________________________________
consensus GATCTTTCTTCAAGAAATGTGAAGAAATTCAAAAAGGGGAAGGAATCAATTGCTGACATT
. : . : . : . : . : . :
rJMSF021C08+ GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
rJMSF027B24+ GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
rJMSF037H07+ GTAAGTGATTATGAAGGNGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
rJMFF037C09+ GTCCAAAGCACCGAGAAAATCTCAGAGT
rJMFF014M21+ GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
____________________________________________________________
consensus GTAAGTGATTATGAAGGTGAAGACAAAAATACGTCCAAAGCACCGAGAAAATCTCAGAGT
. : . : . : . : . : . :
rJMSF021C08+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMSF027B24+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMSF037H07+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMFF037C09+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
rJMFF014M21+ GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
____________________________________________________________
consensus GACTTGAATAAGGATTCTACAGTTGAGACTGGTATAAAAGCTAATAAATTGAAGCTGGGA
. : . : . : . : . : . :
rJMSF021C08+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMSF027B24+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMSF037H07+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMFF037C09+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
rJMFF014M21+ ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
____________________________________________________________
consensus ATGAAGCTTATAGCTAAGGTGCATCAGATACGTGCACTTGGTTTAGTGCTTGATTTGGGG
. : . : . : . : . : . :
rJMSF021C08+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMSF027B24+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMSF037H07+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMFF037C09+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
rJMFF014M21+ GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
____________________________________________________________
consensus GGCGGACTCCGTGGAATGTATCGTTTTGAGCCTGGTGCGAAGAGGGACTTTGAGGTTGGT
. : . : . : . : . : . :
rJMSF021C08+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMSF027B24+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMSF037H07+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMFF037C09+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
rJMFF014M21+ GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
____________________________________________________________
consensus GATCAGGTGTTGGTGAAGTGTACAAGTTTTTCAAGCAAGGGAGTTCCAGTAATGTCATTG
. : . : . : . : . : . :
rJMSF021C08+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMSF027B24+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMSF037H07+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMFF037C09+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
rJMFF014M21+ GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
____________________________________________________________
consensus GTTGAGGATTAGTAGGATAAATAATATCGAAACAAAACTGCACCTGAAGCAAAGGGGACC
. : . : . : . : . : . :
rJMSF021C08+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMSF027B24+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMSF037H07+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMFF037C09+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
rJMFF014M21+ AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
____________________________________________________________
consensus AAAGTAGTGTTGATCCAGGATTTGCAGGTGATGGGTATGTGCAGATTCGCGTAATGGCTC
. : . : . : . : . : . :
rJMSF021C08+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMSF027B24+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMSF037H07+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMFF037C09+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
rJMFF014M21+ AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
____________________________________________________________
consensus AAATCTCGAACCATCACCTGTAATATATAAGGCCATAAGGGCTCATCCTGATCTTCTATT
. : . : . : . : . : . :
rJMSF021C08+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMSF027B24+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMSF037H07+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMFF037C09+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
rJMFF014M21+ GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
____________________________________________________________
consensus GTTGGACCATGCTGCATTGCTGCTGTTTGCCAATGCCTTTCTTGCATTGAACTTCCTCAA
. : . : . : . : . : . :
rJMSF021C08+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMSF027B24+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMSF037H07+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMFF037C09+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
rJMFF014M21+ GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
____________________________________________________________
consensus GAAATTAAAGTTTTGGTAGGTTACTAACCTTGTAAGATTAGCCTGAATTATGCTTCTATT
. : . : . : . : . : . :
rJMSF021C08+ TTTATTAATTTTTTT--AAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMSF027B24+ TTTATTAATTTTTTTAAAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMSF037H07+ TTTATTAATTTTTTTAAAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMFF037C09+ TTTATTAATTTTTTT-AAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
rJMFF014M21+ TTTATTAATTTTTTT-AAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
____________________________________________________________
consensus TTTATTAATTTTTTT-AAAAAAATTTAGGGAGTGCATATAGCTTTGAAGAAAATTTTGTT
. : . : . : . : . : . :
rJMSF021C08+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAAC
rJMSF027B24+ AGATAAGTTGATCGAGATGAT
rJMSF037H07+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAAC
rJMFF037C09+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAACGGACTAT
rJMFF014M21+ AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAACGGACTATTGTTTCAATGAATAATA
____________________________________________________________
consensus AGATAAGTTGATCGAGATGATGTGCTTCCAGAGAACGGACTATTGTTTCAATGAATAATA