| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013D03 | Sequence | 541 | 005169 (5) | ref|XP_009592302.1| | 9e-99 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | 689 | 002555 (3) | ref|XP_009592302.1| | 7e-86 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor |
| JMFF014M07 | Sequence | 513 | 005169 (5) | ref|XP_009592302.1| | 2e-91 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | 702 | 002555 (3) | emb|CDP07184.1| | 7e-83 | unnamed protein product [Coffea canephora] |
| JMSF031N12 | Sequence | 584 | 005169 (5) | ref|XP_009592302.1| | 8e-79 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | 751 | 002555 (3) | emb|CDP07184.1| | 5e-93 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF031N12+ TCAAATCCGTAGATCATCTCTAGATGCTATTGNTGAGAGTGGCCGTGC
____________________________________________________________
consensus TCAAATCCGTAGATCATCTCTAGATGCTATTGNTGAGAGTGGCCGTGC
. : . : . : . : . : . :
rJMFF013D03+ AAAATTTTCCTCATCAACTGCTTGTGTGC
rJMSF031N12+ CACACCATCCTCTCAGAGCGAAACACCAGCCAAAATTTTCCTCATCAACTGCTTGTGTGC
rJMFF014M07+ AAAATTTTCCTCATCAACTGCTTGTGTGC
____________________________________________________________
consensus CACACCATCCTCTCAGAGCGAAACACCAGCCAAAATTTTCCTCATCAACTGCTTGTGTGC
. : . : . : . : . : . :
rJMFF013D03+ CATCCAACAACCATTGTTTGGACATGAAGTTGCATCTGAGTATGTCAACAAACTTGGTCT
rJMSF031N12+ CATCCAACAACCATTGTTTGGACATGAAGTTGCATCTGAGTATGTCAACAAACTTGGTCT
rJMFF014M07+ CATCCAACAACCATTGTTTGGACATGAAGTTGCATCTGAGTATGTCAACAAACTTGGTCT
____________________________________________________________
consensus CATCCAACAACCATTGTTTGGACATGAAGTTGCATCTGAGTATGTCAACAAACTTGGTCT
. : . : . : . : . : . :
rJMFF013D03+ GATGATAAATGATCACATGCGTGGTCTTGTTGAAAAAGAAGTTGATACCATCCTTCGAAG
rJMSF031N12+ GATGATAAATGATCACATGCGTGGTCTTGTTGAAAAAGAAGTTGATACCATCCTTCGAAG
rJMFF014M07+ GATGATAAATGATCACATGCGTGGTCTTGTTGAAAAAGAAGTTGATACCATCCTTCGAAG
____________________________________________________________
consensus GATGATAAATGATCACATGCGTGGTCTTGTTGAAAAAGAAGTTGATACCATCCTTCGAAG
. : . : . : . : . : . :
rJMFF013D03+ ATGTGGTTTGTCAAATAAGATGCCTCATTTCCACAAGTCATTTGGAATCGACGAGTCTGG
rJMSF031N12+ ATGTGGTTTGTCAAATAAGATGCCTCATTTCCACAAGTCATTTGAAATCGACGAGTCTGG
rJMFF014M07+ ATGTGGTTTGTCAAATAAGATGCCTCATTTCCACAAGTCATTTGGAATCGACGAGTCTGG
____________________________________________________________
consensus ATGTGGTTTGTCAAATAAGATGCCTCATTTCCACAAGTCATTTGGAATCGACGAGTCTGG
. : . : . : . : . : . :
rJMFF013D03+ CAACGTAGTTGAGGGGCCACCACTAGCAGAGATCGAAGACATGGCTCCTCCAACTGTTGC
rJMSF031N12+ CAACGTAGTTGAGGGGCCACCACTAGCAGAGATCGAAGACATGGCTCCTCCAACTGTTGC
rJMFF014M07+ CAACGTAGTTGAGGGGCCACCACTAGCAGAGATCGAAGACATGGCTCCTCCAACTGTTGC
____________________________________________________________
consensus CAACGTAGTTGAGGGGCCACCACTAGCAGAGATCGAAGACATGGCTCCTCCAACTGTTGC
. : . : . : . : . : . :
rJMFF013D03+ AGATAGTCTGAAAGCATTCTTTGGCCTCATTTTGGGAAGCGAGAGTACACTGCCAGAATT
rJMSF031N12+ AGATAGTCTGAAAGCATTCTTTGGCCTCATTTTGGGAAGCGAGAGTACACTGCCAGAATT
rJMFF014M07+ AGATAGTCTGAAAGCATTCTTTGGCCTCATTTTGGGAAGCGAGAGTACACTGCCAGAATT
____________________________________________________________
consensus AGATAGTCTGAAAGCATTCTTTGGCCTCATTTTGGGAAGCGAGAGTACACTGCCAGAATT
. : . : . : . : . : . :
rJMFF013D03+ CGAGCCAATGCAAGTACCAAGACTGCGATCAGAAGCTTGTGCACAGGTGGCTAGGTCACT
rJMSF031N12+ CGAGCCAATGCAAGTACCAAGACTGCGATCAGAAGCTTGTGCACAGGTGGCTAGGTCACT
rJMFF014M07+ CGAGCCAATGCAAGTACCAAGACTGCGATCAGAAGCTTGTGCACAGGTGGCTAGGTCACT
____________________________________________________________
consensus CGAGCCAATGCAAGTACCAAGACTGCGATCAGAAGCTTGTGCACAGGTGGCTAGGTCACT
. : . : . : . : . : . :
rJMFF013D03+ GGCCGAAGCATACGAGCTTATTTATAAAGCCATCATGGACCCCAAGAATCACTACCCTGA
rJMSF031N12+ GGCCGAAGCATACGAGCTTATTTATAAAGCCATCATGGACCCCAAGAATCACTACCCTGA
rJMFF014M07+ GGCCGAAGCATACGAGCTTATTTATAAAGCCATCATGGACCCCAAGAATCACTACCCTGA
____________________________________________________________
consensus GGCCGAAGCATACGAGCTTATTTATAAAGCCATCATGGACCCCAAGAATCACTACCCTGA
. : . : . : . : . : . :
rJMFF013D03+ CCCCAAGTCACTGGCTAGACATCCACCTGATCAAATTAGGACAATTTTGGGAATTTGATC
rJMSF031N12+ CCCCAAGTCACTGGCTAGACATCCACCTGATCAAATTAGGACAATTTTGGGAATTTGATC
rJMFF014M07+ CCCCAAGTCACTGGCTAGACATCCACCTGATCAAATTAGGACAATTTTGGGAATTTGATC
____________________________________________________________
consensus CCCCAAGTCACTGGCTAGACATCCACCTGATCAAATTAGGACAATTTTGGGAATTTGATC
. : . : . : . : . : . :
rJMFF013D03+ CTGCGGCTCACACCCAAATCAGTTTAATCTGTCCATTATCTTCTGCAACATTACATGTAA
rJMSF031N12+ CTGCGGCTCACACCCAAATCAGTTTAATCTGTCCATTATCTTCTGCAACATTACATGTAA
rJMFF014M07+ CTGCGGCTCACACCCAAATCAGTTTAATCTGTCCATTATCTTCTGCAACATTACATGTAA
____________________________________________________________
consensus CTGCGGCTCACACCCAAATCAGTTTAATCTGTCCATTATCTTCTGCAACATTACATGTAA
. : . : . : . : . : . :
rJMFF013D03+ ATTGACTTGTAATTTTTTGCTTCACTTATGCTTAAAGAAGAGAGACCTTTCCTCCAACAC
rJMSF031N12+ ATTGACTTGTAATTTTTTGCTTCACTTATGCTTAAAGAAGAGAGACCTTTCCTCCAACAC
rJMFF014M07+ ATTGACTTGTAATTTTTTGCTTCACTTATGCTTAAAGAAGAGAGACCTTTCCTCCAACAC
____________________________________________________________
consensus ATTGACTTGTAATTTTTTGCTTCACTTATGCTTAAAGAAGAGAGACCTTTCCTCCAACAC
. : . : . : . : . : . :
rJMFF013D03+ ATCCATACTTGTATTCCTTTGTGTCAAACCTTT
rJMSF031N12+ ATCCATACTTGTATTCCTTTGTGTCAAACCTTT
rJMFF014M07+ ATCCATACTTGTATTCCTTTGTGTCAAACCTTTTCAGGACATTGCAGTGTAATCCAAAAC
____________________________________________________________
consensus ATCCATACTTGTATTCCTTTGTGTCAAACCTTTTCAGGACATTGCAGTGTAATCCAAAAC