Contig 002553:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014I16Sequence500007859 (3)ref|XP_009620236.1|3e-58PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian761002553 (3)ref|XP_006346080.1|4e-97PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum
JMFF025D11Sequence591007859 (3)ref|XP_009620236.1|2e-68PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian723002553 (3)ref|XP_004244333.1|7e-95PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum
JMSF019G07Sequence221007859 (3)ref|XP_009793722.1|2e-04PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian756002553 (3)ref|XP_006346080.1|1e-99PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019G07+ GGTGGATACACAGATACATCCAGAAAATGCGAATTCCGGTCAGTCTTAA
rJMFF025D11+ TAA
rJMFF014I16+ CACAGATACATCCAGAAAATGCGAATTCCGGTCAGTCTTAA
                      ____________________________________________________________
consensus GGTGGATACACAGATACATCCAGAAAATGCGAATTCCGGTCAGTCTTAA
 
. : . : . : . : . : . :
rJMSF019G07+ CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
rJMFF025D11+ CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
rJMFF014I16+ CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
                      ____________________________________________________________
consensus CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
 
. : . : . : . : . : . :
rJMSF019G07+ AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
rJMFF025D11+ AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
rJMFF014I16+ AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
                      ____________________________________________________________
consensus AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
 
. : . : . : . : . : . :
rJMSF019G07+ CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
rJMFF025D11+ CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
rJMFF014I16+ CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
                      ____________________________________________________________
consensus CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
 
. : . : . : . : . : . :
rJMSF019G07+ AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
rJMFF025D11+ AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
rJMFF014I16+ AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
                      ____________________________________________________________
consensus AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
 
. : . : . : . : . : . :
rJMSF019G07+ GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
rJMFF025D11+ GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
rJMFF014I16+ GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
                      ____________________________________________________________
consensus GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
 
. : . : . : . : . : . :
rJMSF019G07+ CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
rJMFF025D11+ CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
rJMFF014I16+ CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
                      ____________________________________________________________
consensus CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
 
. : . : . : . : . : . :
rJMSF019G07+ AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
rJMFF025D11+ AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
rJMFF014I16+ AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
                      ____________________________________________________________
consensus AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
 
. : . : . : . : . : . :
rJMSF019G07+ CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
rJMFF025D11+ CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
rJMFF014I16+ CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
                      ____________________________________________________________
consensus CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
 
. : . : . : . : . : . :
rJMSF019G07+ CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
rJMFF025D11+ CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
rJMFF014I16+ CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
                      ____________________________________________________________
consensus CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
 
. : . : . : . : . : . :
rJMSF019G07+ AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
rJMFF025D11+ AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
rJMFF014I16+ AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
                      ____________________________________________________________
consensus AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
 
. : . : . : . : . : . :
rJMSF019G07+ GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
rJMFF025D11+ GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
rJMFF014I16+ GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
                      ____________________________________________________________
consensus GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
 
. : . : . : . : . : . :
rJMSF019G07+ CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAA
rJMFF025D11+ CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAATTCTGCAGAACTG
rJMFF014I16+ CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAATTCTGCAGAACTG
                      ____________________________________________________________
consensus CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAATTCTGCAGAACTG