Contig 002552:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035D01+                           GTTTATATAGATGGAAGACCNTTGAATAAGTGGAGAATGTTGG
                      ____________________________________________________________
consensus                              GTTTATATAGATGGAAGACCNTTGAATAAGTGGAGAATGTTGG
 
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rJMSF035D01+          CAGTTCCTCTCCATAACCTAGATGACGATCAACTGGTCAATTCTATTATTCCAAATTTAC
                      ____________________________________________________________
consensus             CAGTTCCTCTCCATAACCTAGATGACGATCAACTGGTCAATTCTATTATTCCAAATTTAC
 
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rJMSF035A19+                                                                    AA
rJMSF035D01+          ATGCCAACATCCTAAAAGCATCTGCAAGATCTGCACGCAAGAAATTGAAAAATAAAATAA
                      ____________________________________________________________
consensus             ATGCCAACATCCTAAAAGCATCTGCAAGATCTGCACGCAAGAAATTGAAAAATAAAATAA
 
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rJMSF035A19+          AGCGTGATCCAGAACCAGCTTTNTACTCNGGTCAATTTNCNGTCGACAATGNTAAAGACA
rJMSF035D01+          AGCGTGATCCAGAACCAGCTTTCTACTCTGGTCAATTTACTGTCGACAATGTTAAAGACA
                      ____________________________________________________________
consensus             AGCGTGATCCAGAACCAGCTTTCTACTCTGGTCAATTTACTGTCGACAATGTTAAAGACA
 
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rJMSF035A19+          CATATATATCAGTACGTGGCTGGAGTAAGGGTGTTACATTTATCAATGGCTTTAACATAG
rJMSF035D01+          CATATATATCACTACGTGGCTGGAGTAAGGGTGTTACATTTATCAATGGCTTTAACATAG
                      ____________________________________________________________
consensus             CATATATATCAGTACGTGGCTGGAGTAAGGGTGTTACATTTATCAATGGCTTTAACATAG
 
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rJMSF035A19+          GACGATNTNGGCCGTCATTTGGGCCACAGTGTANTCTNTATGTCCCTGCTNCAATCCTTA
rJMSF035D01+          GACGATTTTGGCCGTCATTTGGGCCACAGTGTAATCTTTATGTCCCTGCTCCAATCCTTA
                      ____________________________________________________________
consensus             GACGATTTTGGCCGTCATTTGGGCCACAGTGTAATCTTTATGTCCCTGCTCCAATCCTTA
 
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rJMSF035A19+          AAGAGGGGGAAAACCTTGTGGCAATTCTTGAGTTGGAATCAGCAAACCCTGATCTTTCAG
rJMSF035D01+          AAGAGGGGGGAAACCTTGTGGCAATTCTTGAGTTGGAATCAGCAAACCCTGATCTTTCAG
                      ____________________________________________________________
consensus             AAGAGGGGGGAAACCTTGTGGCAATTCTTGAGTTGGAATCAGCAAACCCTGATCTTTCAG
 
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rJMSF035A19+          TGACATCTGTTGAGCAGCCTGACTTTACCTGTGGACCCTCAAGTTCATATGTGCATCAAC
rJMSF035D01+          TGACATCTGTTGAGCAGCCTGACTTTACCTGTGGACCCTCAAGTTCATATGTGCATCAAC
                      ____________________________________________________________
consensus             TGACATCTGTTGAGCAGCCTGACTTTACCTGTGGACCCTCAAGTTCATATGTGCATCAAC
 
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rJMSF035A19+          TCTGACAAAAGCATGGATGCTCTCACCAGCTTGTCACCACTACAAACTTACTATCCAGGT
rJMSF035D01+          TCTGACAAAAGCATGGATGCTCTCACCAGCTTGTCACCACTACAAACTTACTATCCAGGT
                      ____________________________________________________________
consensus             TCTGACAAAAGCATGGATGCTCTCACCAGCTTGTCACCACTACAAACTTACTATCCAGGT
 
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rJMSF035A19+          TGGTTTTTATAGGGGATGAGGGTTTGTGGGGTAAACAGTTGAAACTTGAGTNTAAANTGT
rJMSF035D01+          TGGTTTTTATAGGGGATGAGGGTTTGTGGGGTAAACAGTTGAAACTTGAGTTTAAATTGT
                      ____________________________________________________________
consensus             TGGTTTTTATAGGGGATGAGGGTTTGTGGGGTAAACAGTTGAAACTTGAGTTTAAATTGT
 
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rJMSF035A19+          NTTAATGCTCCAGAACGAGGCAAAACAAACCTATACAATTCCGAGTGCCAATGGTCTGTG
rJMSF035D01+          TTTAATGCTCCAGAA-GAGGCAAAACAAA-CTATACAATTCAGAGTGCCAATGGTCTGTG
JMFF039L20+                                                      AGTGCCAATGGTCTGTG
                      ____________________________________________________________
consensus             TTTAATGCTCCAGAACGAGGCAAAACAAACCTATACAATTCCGAGTGCCAATGGTCTGTG
 
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rJMSF035A19+          CANGTAAAGAATAAAA                                            
rJMSF035D01+          CATGTAAAGAATAAAAAGTTGGGAAATTTTCTCAAGGATTTGGTGTAT            
rJMFF039L20-                        AAAGTGGGGAAATTTTCTCAAGGATTTGGTGTATTACAAAGTCTTA
JMFF039L20+           CATGTAAAGAATAAAAAGTGGGGAAATTTTCTCAAGGATTTGGTGTATTACAAAGTCTTA
                      ____________________________________________________________
consensus             CATGTAAAGAATAAAAAGTGGGGAAATTTTCTCAAGGATTTGGTGTATTACAAAGTCTTA
 
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rJMFF039L20-          CATGCCCAAGCTTTATGACAAATAACCAATTTTATCCTCGCATGGTATAACATCTCTTCC
JMFF039L20+           CATGCCCAAGCTTTATGACAAATAACCAATTTTATCCTCGCATGGTATAACATCTCTTCC
rJMFF014I07-                                            TCCTCGCATGGTATAACATCTCTTCC
                      ____________________________________________________________
consensus             CATGCCCAAGCTTTATGACAAATAACCAATTTTATCCTCGCATGGTATAACATCTCTTCC
 
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rJMFF039L20-          TACTTGGCGTTGCCTTGTCAAACAATTCAACTAGCAACTGCCACTAAGCCTAAAACTTTT
JMFF039L20+           TACTTGGCGTTGCCTTGTCAAACAATTCAACTAGCAACTGCCACTAAGCCTAAAACTTTT
rJMFF014I07-          TACTTGGCGTTGCCTTGTCAAACAATTCAACTAGCAACTGCCACTAAGCCTAAAACTTTT
                      ____________________________________________________________
consensus             TACTTGGCGTTGCCTTGTCAAACAATTCAACTAGCAACTGCCACTAAGCCTAAAACTTTT
 
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rJMFF039L20-          ATTTCAAGACATTTAACAGAATAAACAATGAGACGTTATTTTGGCAACTGTTTAGAAGCC
JMFF039L20+           ATTTCAAGACATTTAACAGAATAAACAATGAGACGTTATTTTGGCAACTGTTTAGAAGCC
rJMFF014I07-          ATTTCAAGACATTTAACAGAATAAACAATGAGACGTTATTTTGGCAACTGTTTAGAAGCC
                      ____________________________________________________________
consensus             ATTTCAAGACATTTAACAGAATAAACAATGAGACGTTATTTTGGCAACTGTTTAGAAGCC
 
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rJMFF039L20-          TCCTGTGGTTCTTGCTTGGATCCTGAAACGGCTGCAGATGCCGCAGCTGTCACTGCAGCC
JMFF039L20+           TCCTGTGGTTCTTGCTTGGATCCTGAAACGGCTGCAGATGCCGCAGCTGTCACTGCAGCC
rJMFF014I07-          TCCTGTGGTTCTTGCTTGGATCCTGAAACGGCTGCAGATGCCGCAGCTGTCACTGCAGCC
                      ____________________________________________________________
consensus             TCCTGTGGTTCTTGCTTGGATCCTGAAACGGCTGCAGATGCCGCAGCTGTCACTGCAGCC
 
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rJMFF039L20-          GCCGCTGCACCTAGCTTCACCCCTCCTGCGGCCTTCATGGCACCGCCAATTTTTGCAAAC
JMFF039L20+           GCCGCTGCACCTAGCTTCACCCCTCCTGCGGCCTTCATGGCACCGCCAATTTTTGCAAAC
rJMFF014I07-          GCCGCTGCACCTAGCTTCACCCCTCCTGCGGCCTTCATGGCACCGCCAATTTTTGCAAAC
                      ____________________________________________________________
consensus             GCCGCTGCACCTAGCTTCACCCCTCCTGCGGCCTTCATGGCACCGCCAATTTTTGCAAAC
 
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rJMFF039L20-          GCGGCTATCCCTCCCACAAGTATGGCTCTCAAAGCAACTGTTGGTTTTACTGACATTTTT
JMFF039L20+           GCGGCTATCCCTCCCACAAGTATGGCTCTCAAAGCAACTGTTGGTTTTACTGACATTTTT
rJMFF014I07-          GCGGCTATCCCTCCCACAAGTATGGCTCTCAAAGCAACTGTTGGTTTTACTGACATTTTT
                      ____________________________________________________________
consensus             GCGGCTATCCCTCCCACAAGTATGGCTCTCAAAGCAACTGTTGGTTTTACTGACATTTTT
 
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rJMFF039L20-          GCTAACCTGAAGGTCTGATAGGAAAGCTGGATCTCTGCAGAAATGGCGCCCTTCTTTCTT
JMFF039L20+           GCTAACCTGAAGGTCTGATAGGAAAGCTGGATCTCTGCAGAAATGGCGCCCTTCTTTCTT
rJMFF014I07-          GCTAACCTGAAGGTCTGATAGGAAAGCTGGATCTCTGCAGAAATGGCGCCCTTCTTTCTT
                      ____________________________________________________________
consensus             GCTAACCTGAAGGTCTGATAGGAAAGCTGGATCTCTGCAGAAATGGCGCCCTTCTTTCTT
 
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rJMFF039L20-          CTTCTGACTACGAAAGACTCTGTGTAGAGAGGAGCGAGCGGGGAAGCGTCAAATGAAGGA
JMFF039L20+           CTTCTGACTACGAAAGACTCTGTGTAGAGAGGAGCGAGCGGGGAAGCGTCAAATGAAGGA
rJMFF014I07-          CTTCTGACTACGAAAGACTCTGTGTAGAGAGGAGCGAGCGGGGAAGCGTCAAATGAAGGA
                      ____________________________________________________________
consensus             CTTCTGACTACGAAAGACTCTGTGTAGAGAGGAGCGAGCGGGGAAGCGTCAAATGAAGGA
 
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rJMFF039L20-          ACCCTCGTTTTGCGGAGAC                                         
JMFF039L20+           ACCCTCGTTTTGCGGAGAC                                         
rJMFF014I07-          ACCCTCGTTTTGCGGAGACTCTTTCCAATATCCCAATTTTCTTTATTTTTATATTATTAT
                      ____________________________________________________________
consensus             ACCCTCGTTTTGCGGAGACTCTTTCCAATATCCCAATTTTCTTTATTTTTATATTATTAT