Contig 002550:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013O16Sequence324002203 (3)ref|XP_009802882.1|6e-12PREDICTED: probable protein phosphatase 2C 4 [Nicotiana sylvestris]726002550 (3)ref|XP_006350766.1|4e-143PREDICTED: probable protein phosphatase 2C 4-like [Solanum tuberosum]
JMFF014D05Sequence496002203 (3)ref|XP_009802882.1|4e-53PREDICTED: probable protein phosphatase 2C 4 [Nicotiana sylvestris]783002550 (3)ref|XP_006350766.1|2e-155PREDICTED: probable protein phosphatase 2C 4-like [Solanum tuberosum]
JMSF020H13Sequence664002203 (3)ref|XP_009802882.1|4e-61PREDICTED: probable protein phosphatase 2C 4 [Nicotiana sylvestris]135002550 (3)ref|XP_009625005.1|4e-19PREDICTED: probable protein phosphatase 2C 4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF014D05+                                                                   ACA
                      ____________________________________________________________
consensus                                                                      ACA
 
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rJMFF013O16+                                                                     A
rJMFF014D05+          AGATGCTCATGGAAAATCCCGAGCTAGCGTTGATGGGTTCTTGCGTTATGGTAATGCTTA
                      ____________________________________________________________
consensus             AGATGCTCATGGAAAATCCCGAGCTAGCGTTGATGGGTTCTTGCGTTATGGTAATGCTTA
 
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rJMFF013O16+          AGGGAGAGGATGTTTACGTGATGAACGTTGGGGATAGTCGAGCTGTGTTGGCTCAGAAGA
rJMFF014D05+          AGGGAGAGGATGTTTACGTGATGAACGTTGGGGATAGTCGAGCTGTGTTGGCTCAGAAGA
                      ____________________________________________________________
consensus             AGGGAGAGGATGTTTACGTGATGAACGTTGGGGATAGTCGAGCTGTGTTGGCTCAGAAGA
 
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rJMFF013O16+          AGGAGCCCGATCTTTGGAGCCAGGATTTGGAAAGGATAAACGAAGAAACATTGCATGATC
rJMFF014D05+          AGGAGCCCGATCTTTGGAGCCAGGATTTGGAAAGGATAAACGAAGAAACATTGCATGATC
                      ____________________________________________________________
consensus             AGGAGCCCGATCTTTGGAGCCAGGATTTGGAAAGGATAAACGAAGAAACATTGCATGATC
 
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rJMFF013O16+          TCGAGGGCTTCGATAGCGAGGGGTTTGATGGGGTATCAAATTTAACCGCGTTCCAGCTTA
rJMFF014D05+          TCGAGGGCTTCGATAGCGAGGGGTTTGATGGGGTATCAAATTTAACCGCGTTCCAGCTTA
                      ____________________________________________________________
consensus             TCGAGGGCTTCGATAGCGAGGGGTTTGATGGGGTATCAAATTTAACCGCGTTCCAGCTTA
 
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rJMFF013O16+          CTACAGATCATAGCACCTCGGTACCAGAGGAAGTCGAACGGATAAGAAACGAGCATCGAG
rJMFF014D05+          CTACAGATCATAGCACCTCGGTACCAGAGGAAGTCGAACGGATAAGAAACGAGCATCGAG
                      ____________________________________________________________
consensus             CTACAGATCATAGCACCTCGGTACCAGAGGAAGTCGAACGGATAAGAAACGAGCATCGAG
 
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rJMFF013O16+          ATGATCCTTTGGCTGTTATAAATGACCGCGTAAAAGGGCTAAAGGTCACCCGAGCTTTCG
rJMFF014D05+          ATGATCCTTTGGCTGTTATAAATGACCGCGTAAAAGGGCTAAAGGTCACCCGAGCTTTCG
                      ____________________________________________________________
consensus             ATGATCCTTTGGCTGTTATAAATGACCGCGTAAAAGGGCTAAAGGTCACCCGAGCTTTCG
 
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rJMFF013O16+          GTGCTGGCTTTCTCAAACAGCCTAAATGGAACAATGCGCTTCTTGAAATGTTCAGGATCG
rJMFF014D05+          GTGCTGGCTTTCTCAAACAGCCTAAATGGAACAATGCGCTTCTTGAAATGTTCAGGATCG
                      ____________________________________________________________
consensus             GTGCTGGCTTTCTCAAACAGCCTAAATGGAACAATGCGCTTCTTGAAATGTTCAGGATCG
 
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rJMFF013O16+          ATTACGTTGGAACTTCCCCGTATATCACCTGTCTCCCGTCACTGTATCATCACAGATTAG
rJMFF014D05+          ATTACGTTGGAACTTCCCCGTATATCACCTGTCTCCCGTCACTGTATCATCACAGATTAG
                      ____________________________________________________________
consensus             ATTACGTTGGAACTTCCCCGTATATCACCTGTCTCCCGTCACTGTATCATCACAGATTAG
 
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rJMFF013O16+          GACCGAGAGACAGGTTCTTGATATTGTCATCGGATGGGCTCTACCAGTACTTTACAAACG
rJMFF014D05+          GTCCGAGAGACAGGTTCTTGATATTGTCATCGGATGGGCTCTACCAGTACTTTACAAACG
                      ____________________________________________________________
consensus             GTCCGAGAGACAGGTTCTTGATATTGTCATCGGATGGGCTCTACCAGTACTTTACAAACG
 
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rJMFF013O16+          AAGAAGCTGTTTTAGAAGTCGAGCATTTCATCTNGTGGTCACCNGAAGGAGATCCCGCCC
rJMSF020H13+                       AGAAGTCGAGCATTTCATCTNGTGGTCACCCNAAGGAGATCCCGCCC
rJMFF014D05+          AAGAAGCTGTTTTAGAAGTCGAGCATTTCATCTCGTGGTCACCCGAAGGAGATCCCGCCC
                      ____________________________________________________________
consensus             AAGAAGCTGTTTTAGAAGTCGAGCATTTCATCTCGTGGTCACCCGAAGGAGATCCCGCCC
 
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rJMFF013O16+          AGCACCTTGTCGAGAAAGTATTGTTTCGGGCAGCAAAGAAAGCAGGTTTGGAGTTTCATG
rJMSF020H13+          AGCACCTTGTCGAGAAAGTATTGTTTCGGNCAGCAAAGAAAGCAGGTTTGGAGTTTCATG
rJMFF014D05+          AGCACCTTGTCGAGAAAGTATTGTTTCGGGCAGCAAAGAAAGCAGGTTTGGAGTTTCATG
                      ____________________________________________________________
consensus             AGCACCTTGTCGAGAAAGTATTGTTTCGGGCAGCAAAGAAAGCAGGTTTGGAGTTTCATG
 
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rJMFF013O16+          AATTGCTNGAAATCCCNCAGGGTGATNGANGAAGGTACCATGACGACGTTTCCATAATCG
rJMSF020H13+          AATTGCTAGAAATCCCACAGGGTGAT                                  
rJMFF014D05+          AATTGCTTGAAATCCCACAGGGTGATCGACGAAGGTACCATGACGACGTTTCCATAATCG
                      ____________________________________________________________
consensus             AATTGCTTGAAATCCCACAGGGTGATCGACGAAGGTACCATGACGACGTTTCCATAATCG
 
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rJMFF013O16+          TCATTTCGT                                                   
rJMFF014D05+          TCATTTCGTTGGAAGGAAGAATATGGAGATCATGTGTATAAGTGTAGGAAAATGAGAAGG
                      ____________________________________________________________
consensus             TCATTTCGTTGGAAGGAAGAATATGGAGATCATGTGTATAAGTGTAGGAAAATGAGAAGG