Contig 002548:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013K12Sequence520002548 (2)ref|XP_009598580.1|292PREDICTED: uncharacterized protein LOC104094361 [Nicotiana tomentosiformis]750002548 (2)ref|XP_009757101.1|224PREDICTED: uncharacterized protein LOC104210010 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF013K12-                                     CCTTCATCAGTTCCGTGGTTCTTCAAAAACGGTG
                      ____________________________________________________________
consensus                                       CCTTCATCAGTTCCGTGGTTCTTCAAAAACGGTG
 
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JMFF013K12-           CTCTTTTATACAAATATGGAATGAATGGTGGCATAGCTGTCGACTCTCTAGGCTCAAATT
                      ____________________________________________________________
consensus             CTCTTTTATACAAATATGGAATGAATGGTGGCATAGCTGTCGACTCTCTAGGCTCAAATT
 
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JMFF013K12-           TGCCACCAGGGGGGGAAAACGATGGGGAATTTTGGCTTGATTTGCCAGATGATGACGATG
                      ____________________________________________________________
consensus             TGCCACCAGGGGGGGAAAACGATGGGGAATTTTGGCTTGATTTGCCAGATGATGACGATG
 
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JMFF013K12-           AAGCTAAGAATTATATCAAGTGTGGCAATATTGACAGTGCTGAACTGTATGTTCATGTAA
                      ____________________________________________________________
consensus             AAGCTAAGAATTATATCAAGTGTGGCAATATTGACAGTGCTGAACTGTATGTTCATGTAA
 
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JMFF013K12-           AGCCAGCTTTAGGGGGGACTTTCACCGATATTGCAATGTGGGTCTTTTGCCCCTTCAACG
rJMFF013K12+                                        TTGCAATGTGGNTCTTTTGCCCNTTCAACG
                      ____________________________________________________________
consensus             AGCCAGCTTTAGGGGGGACTTTCACCGATATTGCAATGTGGGTCTTTTGCCCCTTCAACG
 
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JMFF013K12-           GCCCAGCCACCTTAAAACTATGGTTGTGGGATTTCGAAATGAACAAAGTAGGCGAGCATG
rJMFF013K12+          GCCCAGCCACCTTAAAACTATGGTTGTGGGATTTCGAAATGAACAAAGTAGGCGAGCATG
                      ____________________________________________________________
consensus             GCCCAGCCACCTTAAAACTATGGTTGTGGGATTTCGAAATGAACAAAGTAGGCGAGCATG
 
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JMFF013K12-           TTGGTGATTGGGAGCATTACACTCTACGAATTAGCAACTTCACCGGAGAACTTTGGTCGG
rJMFF013K12+          TTGGTGATTGGGAGCATTACACTCTACGAATTAGCAACTTCACCGGAGAACTTTGGTCGG
                      ____________________________________________________________
consensus             TTGGTGATTGGGAGCATTACACTCTACGAATTAGCAACTTCACCGGAGAACTTTGGTCGG
 
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JMFF013K12-           TGTATTTCTCTGAGCACAGTGGCGGTGAATGGGTGGATGCCAGTGACCTGGAGTTTATCG
rJMFF013K12+          TGTATTTCTCTGAGCACAGTGGCGGTGAATGGGTGGATGCCAGTGACCTGGAGTTTATCG
                      ____________________________________________________________
consensus             TGTATTTCTCTGAGCACAGTGGCGGTGAATGGGTGGATGCCAGTGACCTGGAGTTTATCG
 
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JMFF013K12-           AGGGAAACAAGTGTATAGTATACTCATCAAGAAATGGCCACGCGAGCTTCCCTCATGCTG
rJMFF013K12+          AGGGAAACAAGTGTATAGTATACTCATCAAGAAATGGCCACGCGAGCTTCCCTCATGCTG
                      ____________________________________________________________
consensus             AGGGAAACAAGTGTATAGTATACTCATCAAGAAATGGCCACGCGAGCTTCCCTCATGCTG
 
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JMFF013K12-           GCTGTT                                                      
rJMFF013K12+          GCTGTTACCTTCAAGGCTCTTCGGTTCTTGGAATAGGAGTAAGGAATGATTGCGATACGA
                      ____________________________________________________________
consensus             GCTGTTACCTTCAAGGCTCTTCGGTTCTTGGAATAGGAGTAAGGAATGATTGCGATACGA
 
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rJMFF013K12+          GCAAGTATTACCTGGACTCAAGCACCAAGTATCAAATCATTGCAGCTGAGCACCTCGGAG
                      ____________________________________________________________
consensus             GCAAGTATTACCTGGACTCAAGCACCAAGTATCAAATCATTGCAGCTGAGCACCTCGGAG
 
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rJMFF013K12+          TGAGTCGTTGCAGAACCGCCTTGGTTACAGTACATGAGGGAGTGGGGCCCTACTATCGAA
                      ____________________________________________________________
consensus             TGAGTCGTTGCAGAACCGCCTTGGTTACAGTACATGAGGGAGTGGGGCCCTACTATCGAA
 
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rJMFF013K12+          TACGATTCCACATCTGAGGTGGATAAGATAATCAACCACCTTCCCTTCTTCATTAGACTT
                      ____________________________________________________________
consensus             TACGATTCCACATCTGAGGTGGATAAGATAATCAACCACCTTCCCTTCTTCATTAGACTT
 
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rJMFF013K12+          TCAGTGGAGACTCTCTTTGAACTGTTCCCAACTGAACTATATGGCGAGGCTGGGCCAACA
                      ____________________________________________________________
consensus             TCAGTGGAGACTCTCTTTGAACTGTTCCCAACTGAACTATATGGCGAGGCTGGGCCAACA
 
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rJMFF013K12+          GGACCAAAAGAGAAGAACAATTGGTTTGGGGATGAAAGGTGAAGCAGATCGCATTTAAAA
                      ____________________________________________________________
consensus             GGACCAAAAGAGAAGAACAATTGGTTTGGGGATGAAAGGTGAAGCAGATCGCATTTAAAA
 
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rJMFF013K12+          GCACCATGATTACCATGAAAGCTGCAGATTACCTATTGGTAATGTGAAATTGTAAAGAGA
                      ____________________________________________________________
consensus             GCACCATGATTACCATGAAAGCTGCAGATTACCTATTGGTAATGTGAAATTGTAAAGAGA
 
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rJMFF013K12+          ACATTTTTTTGTCAGCTTTCTGTGCTAATTGTTGTCTGTATGTAATGCTTATAGAAGATT
                      ____________________________________________________________
consensus             ACATTTTTTTGTCAGCTTTCTGTGCTAATTGTTGTCTGTATGTAATGCTTATAGAAGATT