Contig 002546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013G11Sequence527005261 (3)ref|XP_011098318.1|1e-06PREDICTED: probable ubiquitin-conjugating enzyme E2 26 [Sesamum indicum]748002546 (2)ref|XP_009626762.1|4e-75PREDICTED: probable ubiquitin-conjugating enzyme E2 25 [Nicotiana tomentosiform
JMSF043L11Sequence808005261 (3)ref|XP_009775370.1|112PREDICTED: uncharacterized protein LOC104225299 [Nicotiana sylvestris]762002546 (2)ref|XP_009626762.1|1e-91PREDICTED: probable ubiquitin-conjugating enzyme E2 25 [Nicotiana tomentosiform

Alignment

This contig is upended


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rJMSF043L11+                   TGCGGAAAAGTATGCCTGAGCCTCCTCAACACTTGGAGTGGCCATGGGAAG
rJMFF013G11+                                            TCAACACTTGGAGTGGCCATGGGAAG
                      ____________________________________________________________
consensus                      TGCGGAAAAGTATGCCTGAGCCTCCTCAACACTTGGAGTGGCCATGGGAAG
 
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rJMSF043L11+          GAGAAGTGGATGCCTCGTGAATCAACCATGCTGCAGGTTTTGGTTTCTATACAAGGGCTG
rJMFF013G11+          GAGAAGTGGATGCCTCGTGAATCAACCATGCTGCAGGTTTTGGTTTCTATACAAGGGCTG
                      ____________________________________________________________
consensus             GAGAAGTGGATGCCTCGTGAATCAACCATGCTGCAGGTTTTGGTTTCTATACAAGGGCTG
 
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rJMSF043L11+          ATTTTGAATGCAAAGCCCTATTTTAACGAGCCAGGATTTGCTGGATCCGAAGGGACAGTT
rJMFF013G11+          ATTTTGAATGCAAAGCCCTATTTTAACGAGCCAGGATTTGCTGGATCCGAAGGGACAGTT
                      ____________________________________________________________
consensus             ATTTTGAATGCAAAGCCCTATTTTAACGAGCCAGGATTTGCTGGATCCGAAGGGACAGTT
 
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rJMSF043L11+          GCAGGGGAGAAGAGCTCGCTACAATACAATGAGAACACATATATCTCAAATCTCAGAACA
rJMFF013G11+          GCAGGGGAGAAGAGCTCGCTACAATACAATGAGAACACATATATCTCAAATCTCAGAACA
                      ____________________________________________________________
consensus             GCAGGGGAGAAGAGCTCGCTACAATACAATGAGAACACATATATCTCAAATCTCAGAACA
 
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rJMSF043L11+          ATGCTTTACTCCATACGGAAGCCACCTAAGCATTTTGAGGATTTAGTCAAGGGACACTTT
rJMFF013G11+          ATGCTTTACTCCATACGGAAGCCACCTAAGCATTTTGAGGATTTAGTCAAGGGACACTTT
                      ____________________________________________________________
consensus             ATGCTTTACTCCATACGGAAGCCACCTAAGCATTTTGAGGATTTAGTCAAGGGACACTTT
 
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rJMSF043L11+          GTTCTGCATGCTCAAGATGTTCTGGTGGCATGCAAAACATATATAGATGGTGCTCAAGTA
rJMFF013G11+          GTTCTGCATGCTCAAGATGTTCTGGTGGCATGCAAAACATATATAGATGGTGCTCAAGTA
                      ____________________________________________________________
consensus             GTTCTGCATGCTCAAGATGTTCTGGTGGCATGCAAAACATATATAGATGGTGCTCAAGTA
 
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rJMSF043L11+          GGTAGCCTAGTTAGCGGAGGGGTGCAGGATGTTGATGAAGGTGACAAAAGCTGTTCAGAA
rJMFF013G11+          GGTAGCCTAGTTAGCGGAGGGGTGCAGGATGTTGATGAAGGTGACAAAAGCTGTTCAGAA
                      ____________________________________________________________
consensus             GGTAGCCTAGTTAGCGGAGGGGTGCAGGATGTTGATGAAGGTGACAAAAGCTGTTCAGAA
 
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rJMSF043L11+          GTTTTCAAGAAATCTGTAGCAGGCCTCATCAAGACACTTGTAGAGTCATTTACTCAGGTT
rJMFF013G11+          GTTTTCAAGAAATCTGTAGCAGGCCTCATCAAGACACTTGTAGAGTCATTTACTCAGGTT
                      ____________________________________________________________
consensus             GTTTTCAAGAAATCTGTAGCAGGCCTCATCAAGACACTTGTAGAGTCATTTACTCAGGTT
 
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rJMSF043L11+          GGCGCTAAGGATT-GCGATAAATTTCTATATCTAGCAGAAAAAGCGACCGTGCCTCTGCC
rJMFF013G11+          GGCGCTAAGGATTNGCGATAAATTTCTATATCTAGCAGAAAAAGCGACCGTGCCTCTGCC
                      ____________________________________________________________
consensus             GGCGCTAAGGATTNGCGATAAATTTCTATATCTAGCAGAAAAAGCGACCGTGCCTCTGCC
 
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rJMSF043L11+          TGTTTCTGCATCTGTATCCTCCTATGCTTCTTATCATTATTACTGACCTGATGATTAAAG
rJMFF013G11+          TGTTTCTGCATCTGTATCCTCCTATGCTTCTTATCATTATTACTGACCTGATGATTAAAG
                      ____________________________________________________________
consensus             TGTTTCTGCATCTGTATCCTCCTATGCTTCTTATCATTATTACTGACCTGATGATTAAAG
 
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rJMSF043L11+          GGAGTAGAGGGGCTGAGAATTTGGTCTTTAAACACAGAAAGGCATCTTGAAATTTAAGGT
rJMFF013G11+          GGAGTAGAGGGGCTGAGAATTTGGTCTTTAAACACAGAAAGGCATCTTGAAATTTAAGGT
                      ____________________________________________________________
consensus             GGAGTAGAGGGGCTGAGAATTTGGTCTTTAAACACAGAAAGGCATCTTGAAATTTAAGGT
 
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rJMSF043L11+          TAACATAACAATCTAGCCTTGATGTTGATAATTACAAATCAGATTTGGTGGTTCTCTTTT
rJMFF013G11+          TAACATAACAATCTAGCCTTGATGTTGATAATTACAAATCAGATTTGGTGGTTCTCTTTT
                      ____________________________________________________________
consensus             TAACATAACAATCTAGCCTTGATGTTGATAATTACAAATCAGATTTGGTGGTTCTCTTTT
 
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rJMSF043L11+          TAATTGGAGCTGTATATGATGTTTTGTTTATAAGTTAATCGATTTACTCATA        
rJMFF013G11+          TAATTGGAGCTGTATATGATGTTTTGTTTATAAGTTAATCGATTTACTCATAGTGAATCG
                      ____________________________________________________________
consensus             TAATTGGAGCTGTATATGATGTTTTGTTTATAAGTTAATCGATTTACTCATAGTGAATCG