| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012G09 | Sequence | 512 | 004502 (5) | 741 | 002544 (4) | ref|XP_006361676.1| | 2e-17 | PREDICTED: vacuolar amino acid transporter 1-like [Solanum tuberosum] | |||
| JMSF008M23 | Sequence | 361 | 004502 (5) | 730 | 002544 (4) | gb|AFK35314.1| | 2e-70 | unknown [Lotus japonicus] | |||
| JMSF020N22 | Sequence | 680 | 004502 (5) | ref|XP_011084300.1| | 1e-35 | PREDICTED: vacuolar amino acid transporter 1 isoform X1 [Sesamum indicum] | 757 | 002544 (4) | gb|AFK35314.1| | 5e-30 | unknown [Lotus japonicus] |
| JMSF036N04 | Sequence | 706 | 004502 (5) | ref|XP_011084300.1| | 2e-39 | PREDICTED: vacuolar amino acid transporter 1 isoform X1 [Sesamum indicum] | 682 | 002544 (4) | gb|AFK35314.1| | 5e-64 | unknown [Lotus japonicus] |
This contig is upended
. : . : . : . : . : . :
rJMSF020N22+ ACCATATGCACCTCTACTTGAA
____________________________________________________________
consensus ACCATATGCACCTCTACTTGAA
. : . : . : . : . : . :
rJMSF020N22+ ATTCTTAGTAGCATTTTTTAGAAGTAATCACATCACACACTATACAGAATCGTTCTAACC
____________________________________________________________
consensus ATTCTTAGTAGCATTTTTTAGAAGTAATCACATCACACACTATACAGAATCGTTCTAACC
. : . : . : . : . : . :
rJMSF020N22+ AACAATTCCAACACAAAAGGATACGTGAACTAGCTATATAGATGCTTTCTTGTAAGAAAT
____________________________________________________________
consensus AACAATTCCAACACAAAAGGATACGTGAACTAGCTATATAGATGCTTTCTTGTAAGAAAT
. : . : . : . : . : . :
rJMSF020N22+ TTCTACTGCCATTACTCTCCTGATTGTGTTTCTACCTGAAATAAAACAATAAATTTCCCC
____________________________________________________________
consensus TTCTACTGCCATTACTCTCCTGATTGTGTTTCTACCTGAAATAAAACAATAAATTTCCCC
. : . : . : . : . : . :
rJMSF008M23+ GTATGCATTAACCATTGCTCC
rJMSF020N22+ GTGCATAGGCCAGAGGTTGTCTTCCTTAATTAGCTACACGTATGCATTAACCATTGCTCC
rJMSF036N04+ GTATGCATTAACCATTGCTCC
rJMFF012G09+ GTATGCATTAACCATTGCTCC
____________________________________________________________
consensus GTGCATAGGCCAGAGGTTGTCTTCCTTAATTAGCTACACGTATGCATTAACCATTGCTCC
. : . : . : . : . : . :
rJMSF008M23+ TGTGGCAATGAGTCTTGAAGAATTGATACCCTCAGGCCAAGGCAAATCTCGTTGGATGTA
rJMSF020N22+ TGTGGCAATGAGTCTTGAAGAATTGATACCCTCAGGCCAAGGCAAATCTCGTTGGATGTA
rJMSF036N04+ TGTGGCAATGAGTCTTGAAGAATTGATACCCTCAGGCCAAGGCAAATCTCGTTGGATGTA
rJMFF012G09+ TGTGGCAATGAGTCTTGAAGAATTGATACCCTCAGGCCAAGGCAAATCTCGTTGGATGTA
____________________________________________________________
consensus TGTGGCAATGAGTCTTGAAGAATTGATACCCTCAGGCCAAGGCAAATCTCGTTGGATGTA
. : . : . : . : . : . :
rJMSF008M23+ TTCAATCTTCATCAGGACAGCACTGGTGGTATCGTCTTTAATTGTTGGTCTCTTGATACC
rJMSF020N22+ TTCAATCTTCATCAGGACAGCACTGGTGGTATCGTCTTTAATTGTTGGTCTCTTGATACC
rJMSF036N04+ TTCAATCTTCATCAGGACAGCACTGGTGGTATCGTCTTTAATTGTTGGTCTCTTGATACC
rJMFF012G09+ TTCAATCTTCATCAGGACAGCACTGGTGGTATCGTCTTTAATTGTTGGTCTCTTGATACC
____________________________________________________________
consensus TTCAATCTTCATCAGGACAGCACTGGTGGTATCGTCTTTAATTGTTGGTCTCTTGATACC
. : . : . : . : . : . :
rJMSF008M23+ CTTCTTCGGTCTTGTGATGTCCCTTATTGGATCTTTTCTCACCATGCTAGTC--------
rJMSF020N22+ CTTCTTCGGTCTTGTGATGTCCCTTATTGGATCTTTTCTCACCATGCTAGTC--------
rJMSF036N04+ CTTCTTCGGTCTTGTGATGTCCCTTATTGGATCTTTTCTCACCATGCTAGTC--------
rJMFF012G09+ CTTCTTCGGTCTTGTGATGTCCCTTATTGGATCTTTTCTCACCATGCTAGTCTTTTGTTT
____________________________________________________________
consensus CTTCTTCGGTCTTGTGATGTCCCTTATTGGATCTTTTCTCACCATGCTAGTC--------
. : . : . : . : . : . :
rJMSF008M23+ ---ACACTGATACTCCCTTGCGCCTGTTATCTTAGCGTATTGAGGGGTAAAATAAGCTAC
rJMSF020N22+ ---ACACTGATACTCCCTTGCGCCTGTTATCTTAGCGTATTGAGGGGTAAAATAAGCTAC
rJMSF036N04+ ---ACACTGATACTCCCTTGCGCCTGTTATCTTAGCGTATTGAGGGGTAAAATAAGCTAC
rJMFF012G09+ CAGACACTGATACTCCCTTGCGCCTGTTATCTTAGCGTATTGAGGGGTAAAATAAGCTAC
____________________________________________________________
consensus ---ACACTGATACTCCCTTGCGCCTGTTATCTTAGCGTATTGAGGGGTAAAATAAGCTAC
. : . : . : . : . : . :
rJMSF008M23+ ATCCAGGCATCAGCTTGTGTAGTTGTTATGGGAGTGGGAGTGGTATCATCAGCTTTTGGA
rJMSF020N22+ ATCCAGGCATCAGCTTGTGTAGTTGTTATGGGAGTGGGAGTGGTATCATCAGCTTTTGGA
rJMSF036N04+ ATCCAGGCATCAGCTTGTGTAGTTGTTATGGGAGTGGGAGTGGTATCATCAGCTTTTGGA
rJMFF012G09+ ATCCAGGCATCAGCTTGTGTAGTTGTTATGGGAGTGGGAGTGGTATCATCAGCTTTTGGA
____________________________________________________________
consensus ATCCAGGCATCAGCTTGTGTAGTTGTTATGGGAGTGGGAGTGGTATCATCAGCTTTTGGA
. : . : . : . : . : . :
rJMSF008M23+ ACATATTCTGCCCTTTTCCAGATTGTTGAGAGTCTGAGTGGTTGAGCTGAATCTGTTTGT
rJMSF020N22+ ACATATTCTGCCCTTTTCCAGATTGTTGAGAGTCTGAGTGGTTGAGCTGAATCTGTTTGT
rJMSF036N04+ ACATATTCTGCCCTTTTCCAGATTGTTGAGAGTCTGAGTGGTTGAGCTGAATCTGTTTGT
rJMFF012G09+ ACATATTCTGCCCTTTTCCAGATTGTTGAGAGTCTGAGTGGTTGAGCTGAATCTGTTTGT
____________________________________________________________
consensus ACATATTCTGCCCTTTTCCAGATTGTTGAGAGTCTGAGTGGTTGAGCTGAATCTGTTTGT
. : . : . : . : . : . :
rJMSF008M23+ AGTTTAGATGCCTTTCACATACATTCATACTATATAGAACTTTTATCTACTCTAGTTGCT
rJMSF020N22+ AGTTTAGATGCCTTTCACATACATTCATACTATATAGAACTTTTATCTACTCTAGTTGCT
rJMSF036N04+ AGTTTAGATGCCTTTCACATACATTCATACTATATAGAACTTTTATCTACTCTAGTTGCT
rJMFF012G09+ AGTTTAGATGCCTTTCACATACATTCATACTATATAGAACTTTTATCTACTCTAGTTGCT
____________________________________________________________
consensus AGTTTAGATGCCTTTCACATACATTCATACTATATAGAACTTTTATCTACTCTAGTTGCT
. : . : . : . : . : . :
rJMSF008M23+ GGTTTAGTAGTGGTTTCTCATATTCTTTCTTCTATAATTACTTGGTTTCTTTACCTGTTC
rJMSF020N22+ GGTTTAGTAGTGGTTTCTCATATTCTTTCTTCTATAATTACTTGGTTTCTTTACCTGTTC
rJMSF036N04+ GGTTTAGTAGTGGTTTCTCATATTCTTTCTTCTATAATTACTTGGTTTCTTTACCTGTTC
rJMFF012G09+ GGTTTAGTAGTGGTTTCTCATATTCTTTCTTCTATAATTACTTGGTTTCTTTACCTGTTC
____________________________________________________________
consensus GGTTTAGTAGTGGTTTCTCATATTCTTTCTTCTATAATTACTTGGTTTCTTTACCTGTTC
. : . : . : . : . : . :
rJMSF008M23+ AATTGTAGTACC
rJMSF020N22+ AATTGTAGTACC
rJMSF036N04+ AATTGTAGTACC
rJMFF012G09+ AATTGTAGTACCATGTTTATGAATGTTGTAATTTTATTGAAATATATGAGAAAGAGAGAG
____________________________________________________________
consensus AATTGTAGTACCATGTTTATGAATGTTGTAATTTTATTGAAATATATGAGAAAGAGAGAG