Contig 002539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010N18Sequence542004491 (9)ref|NP_001234287.1|2e-41vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu773002539 (6)dbj|BAH20314.1|9e-67AT1G78900 [Arabidopsis thaliana]
JMFF017K12Sequence578004491 (9)gb|EYU21201.1|1e-74hypothetical protein MIMGU_mgv1a002947mg [Erythranthe guttata]649002539 (6)ref|XP_006362109.1|2e-47PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]
JMFF018K21Sequence556004491 (9)gb|EYU21201.1|1e-69hypothetical protein MIMGU_mgv1a002947mg [Erythranthe guttata]757002539 (6)ref|XP_006362109.1|4e-75PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]
JMFF040C17Sequence498004491 (9)ref|NP_001234287.1|1e-52vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu679002539 (6)ref|NP_001234281.1|2e-48vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu
JMSF027B02Sequence621004491 (9)ref|XP_009608462.1|1e-77PREDICTED: V-type proton ATPase catalytic subunit A-like [Nicotiana tomentosifo731002539 (6)dbj|BAH20314.1|4e-62AT1G78900 [Arabidopsis thaliana]
JMSF050E13Sequence682004491 (9)gb|KDO46834.1|5e-100hypothetical protein CISIN_1g010179mg [Citrus sinensis]791002539 (6)ref|XP_006362109.1|1e-75PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF018K21+ AAGGATGCTTTAGCTGAAACCGATAAAA
rJMSF050E13+ GAAAGGATGCTTTAGCTGAAACCGATAAAA
                      ____________________________________________________________
consensus GAAAGGATGCTTTAGCTGAAACCGATAAAA
 
. : . : . : . : . : . :
rJMFF018K21+ TTACCCTTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
rJMSF027B02+ GAAGACTACCTTGCACAAAATGCTTTTACAC
rJMSF050E13+ TTACCCNTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
rJMFF010N18+ TTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
                      ____________________________________________________________
consensus TTACCCTTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
 
. : . : . : . : . : . :
rJMFF018K21+ CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMSF027B02+ CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMFF017K12+ TCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMSF050E13+ CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMFF040C17+ TACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMFF010N18+ CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
                      ____________________________________________________________
consensus CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
 
. : . : . : . : . : . :
rJMFF018K21+ TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMSF027B02+ TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMFF017K12+ TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMSF050E13+ TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMFF040C17+ TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMFF010N18+ TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
                      ____________________________________________________________
consensus TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
 
. : . : . : . : . : . :
rJMFF018K21+ CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTNTACCGTTTGGTGTCTCAAAAAT
rJMSF027B02+ CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
rJMFF017K12+ CTTATAGTTTGATTAAGCACCGCCTNGGAGATCTGTTNTACCGTTTGGTGTCTCAAAAAT
rJMSF050E13+ CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
rJMFF040C17+ CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
rJMFF010N18+ CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
                      ____________________________________________________________
consensus CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
 
. : . : . : . : . : . :
rJMFF018K21+ TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAGGTTCAAAAAGCTTCACGATG
rJMSF027B02+ TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMFF017K12+ TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMSF050E13+ TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMFF040C17+ TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMFF010N18+ TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
                      ____________________________________________________________
consensus TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
 
. : . : . : . : . : . :
rJMFF018K21+ ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
rJMSF027B02+ ATTTGATTGCTGGCTTCCGTAACCTTGAAGGTGAAACTCGATGAATGCCATGTGACACCC
rJMFF017K12+ ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
rJMSF050E13+ ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
rJMFF040C17+ ATTTGATTGCTGGCTTCCGTAACCTTGAGGATGAAACTCGATGAATGCCATGTGACACCC
rJMFF010N18+ ATTTGATTGCTGGCTTCGGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
                      ____________________________________________________________
consensus ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
 
. : . : . : . : . : . :
rJMFF018K21+ ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMSF027B02+ ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMFF017K12+ ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMSF050E13+ ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMFF040C17+ ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMFF010N18+ ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
                      ____________________________________________________________
consensus ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
 
. : . : . : . : . : . :
rJMFF018K21+ ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMSF027B02+ ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMFF017K12+ ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMSF050E13+ ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMFF040C17+ ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMFF010N18+ ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
                      ____________________________________________________________
consensus ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
 
. : . : . : . : . : . :
rJMFF018K21+ AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMSF027B02+ AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMFF017K12+ AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMSF050E13+ AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMFF040C17+ AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMFF010N18+ AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
                      ____________________________________________________________
consensus AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
 
. : . : . : . : . : . :
rJMFF018K21+ CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMSF027B02+ CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMFF017K12+ CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMSF050E13+ CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMFF040C17+ CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCATTTTTTTTGCCGTTAATT
rJMFF010N18+ CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
                      ____________________________________________________________
consensus CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
 
. : . : . : . : . : . :
rJMFF018K21+ AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMSF027B02+ AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMFF017K12+ AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMSF050E13+ AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMFF040C17+ AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMFF010N18+ AAAAGAAATAGGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
                      ____________________________________________________________
consensus AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
 
. : . : . : . : . : . :
rJMFF018K21+ ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMSF027B02+ ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMFF017K12+ ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMSF050E13+ ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMFF040C17+ ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMFF010N18+ ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
                      ____________________________________________________________
consensus ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
 
. : . : . : . : . : . :
rJMFF018K21+ TAATAATTCG
rJMSF027B02+ TAATAATTCGTGTATTACAACT
rJMFF017K12+ TAATAATTCGT
rJMSF050E13+ TAATAATTCGTGTATTACAACT
rJMFF040C17+ TAATAATTCGTGTATTACAACT
rJMFF010N18+ TAATAATTCGTGTATTACAACTTGAAATTCACTACGGGGTTCCCTTTTGTTTATCAGATC
                      ____________________________________________________________
consensus TAATAATTCGTGTATTACAACTTGAAATTCACTACGGGGTTCCCTTTTGTTTATCAGATC