Contig 002539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010N18Sequence542004491 (9)ref|NP_001234287.1|2e-41vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu773002539 (6)dbj|BAH20314.1|9e-67AT1G78900 [Arabidopsis thaliana]
JMFF017K12Sequence578004491 (9)gb|EYU21201.1|1e-74hypothetical protein MIMGU_mgv1a002947mg [Erythranthe guttata]649002539 (6)ref|XP_006362109.1|2e-47PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]
JMFF018K21Sequence556004491 (9)gb|EYU21201.1|1e-69hypothetical protein MIMGU_mgv1a002947mg [Erythranthe guttata]757002539 (6)ref|XP_006362109.1|4e-75PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]
JMFF040C17Sequence498004491 (9)ref|NP_001234287.1|1e-52vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu679002539 (6)ref|NP_001234281.1|2e-48vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu
JMSF027B02Sequence621004491 (9)ref|XP_009608462.1|1e-77PREDICTED: V-type proton ATPase catalytic subunit A-like [Nicotiana tomentosifo731002539 (6)dbj|BAH20314.1|4e-62AT1G78900 [Arabidopsis thaliana]
JMSF050E13Sequence682004491 (9)gb|KDO46834.1|5e-100hypothetical protein CISIN_1g010179mg [Citrus sinensis]791002539 (6)ref|XP_006362109.1|1e-75PREDICTED: V-type proton ATPase catalytic subunit A-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF018K21+                                          AAGGATGCTTTAGCTGAAACCGATAAAA
rJMSF050E13+                                        GAAAGGATGCTTTAGCTGAAACCGATAAAA
                      ____________________________________________________________
consensus                                           GAAAGGATGCTTTAGCTGAAACCGATAAAA
 
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rJMFF018K21+          TTACCCTTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
rJMSF027B02+                                       GAAGACTACCTTGCACAAAATGCTTTTACAC
rJMSF050E13+          TTACCCNTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
rJMFF010N18+                TTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
                      ____________________________________________________________
consensus             TTACCCTTGAAACTGCCAAGCTGCTGAGGGAAGACTACCTTGCACAAAATGCTTTTACAC
 
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rJMFF018K21+          CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMSF027B02+          CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMFF017K12+                               TCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMSF050E13+          CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMFF040C17+                                 TACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
rJMFF010N18+          CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
                      ____________________________________________________________
consensus             CATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGTTGCGCAACATTATACACT
 
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rJMFF018K21+          TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMSF027B02+          TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMFF017K12+          TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMSF050E13+          TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMFF040C17+          TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
rJMFF010N18+          TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
                      ____________________________________________________________
consensus             TCTACAACTTGGCAAATCAGGCTGTCGAGCGAGGAGCTGGTATGGATGGTCAAAAGATCA
 
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rJMFF018K21+          CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTNTACCGTTTGGTGTCTCAAAAAT
rJMSF027B02+          CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
rJMFF017K12+          CTTATAGTTTGATTAAGCACCGCCTNGGAGATCTGTTNTACCGTTTGGTGTCTCAAAAAT
rJMSF050E13+          CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
rJMFF040C17+          CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
rJMFF010N18+          CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
                      ____________________________________________________________
consensus             CTTATAGTTTGATTAAGCACCGCCTTGGAGATCTGTTCTACCGTTTGGTGTCTCAAAAAT
 
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rJMFF018K21+          TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAGGTTCAAAAAGCTTCACGATG
rJMSF027B02+          TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMFF017K12+          TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMSF050E13+          TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMFF040C17+          TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
rJMFF010N18+          TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
                      ____________________________________________________________
consensus             TTGAGGACCCTGCTGAAGGAGAAGATGTCTTGGTGGCCAAGTTCAAAAAGCTTCACGATG
 
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rJMFF018K21+          ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
rJMSF027B02+          ATTTGATTGCTGGCTTCCGTAACCTTGAAGGTGAAACTCGATGAATGCCATGTGACACCC
rJMFF017K12+          ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
rJMSF050E13+          ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
rJMFF040C17+          ATTTGATTGCTGGCTTCCGTAACCTTGAGGATGAAACTCGATGAATGCCATGTGACACCC
rJMFF010N18+          ATTTGATTGCTGGCTTCGGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
                      ____________________________________________________________
consensus             ATTTGATTGCTGGCTTCCGTAACCTTGAAGATGAAACTCGATGAATGCCATGTGACACCC
 
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rJMFF018K21+          ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMSF027B02+          ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMFF017K12+          ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMSF050E13+          ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMFF040C17+          ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
rJMFF010N18+          ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
                      ____________________________________________________________
consensus             ACGTATTCGGATAATTCGGGTTGTCTATACATGAAGCAAAAAGTGAGTTTTTTTTCTTGT
 
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rJMFF018K21+          ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMSF027B02+          ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMFF017K12+          ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMSF050E13+          ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMFF040C17+          ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
rJMFF010N18+          ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
                      ____________________________________________________________
consensus             ATTAGCATATTGCATCAATCAGGGATTTCGATGCATGCCTCTCTGGTCCACAATCCTGGT
 
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rJMFF018K21+          AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMSF027B02+          AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMFF017K12+          AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMSF050E13+          AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMFF040C17+          AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
rJMFF010N18+          AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
                      ____________________________________________________________
consensus             AGAACAGGAGAATTAAGACACGGAAGAAGAAGAAGAAACAGTGCTTGTTTGGCAGTTCCA
 
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rJMFF018K21+          CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMSF027B02+          CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMFF017K12+          CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMSF050E13+          CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
rJMFF040C17+          CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCATTTTTTTTGCCGTTAATT
rJMFF010N18+          CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
                      ____________________________________________________________
consensus             CATTTTGTGTTAGCTTTTTCTGTATGTAGCTTGGTGAGTCCA-TTTTTTTGCCGTTAATT
 
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rJMFF018K21+          AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMSF027B02+          AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMFF017K12+          AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMSF050E13+          AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMFF040C17+          AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
rJMFF010N18+          AAAAGAAATAGGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
                      ____________________________________________________________
consensus             AAAAGAAATAAGAGGTGCCACCTAGGTATATTTATTTATTTATTGTATTTGCTGGTCTTC
 
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rJMFF018K21+          ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMSF027B02+          ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMFF017K12+          ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMSF050E13+          ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMFF040C17+          ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
rJMFF010N18+          ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
                      ____________________________________________________________
consensus             ACTCTTCATCACCGGGTCTTAAAGATTTGAACTGTAATTGATATTTTCTTATCCCTGTCC
 
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rJMFF018K21+          TAATAATTCG                                                  
rJMSF027B02+          TAATAATTCGTGTATTACAACT                                      
rJMFF017K12+          TAATAATTCGT                                                 
rJMSF050E13+          TAATAATTCGTGTATTACAACT                                      
rJMFF040C17+          TAATAATTCGTGTATTACAACT                                      
rJMFF010N18+          TAATAATTCGTGTATTACAACTTGAAATTCACTACGGGGTTCCCTTTTGTTTATCAGATC
                      ____________________________________________________________
consensus             TAATAATTCGTGTATTACAACTTGAAATTCACTACGGGGTTCCCTTTTGTTTATCAGATC