Contig 002538:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L21Sequence578007317 (2)ref|XP_009804164.1|2e-70PREDICTED: WUSCHEL-related homeobox 1 [Nicotiana sylvestris]635002538 (2)ref|XP_006341531.1|1e-08PREDICTED: WUSCHEL-related homeobox 1-like [Solanum tuberosum]
JMFF017N22Sequence580007317 (2)ref|XP_009804164.1|2e-70PREDICTED: WUSCHEL-related homeobox 1 [Nicotiana sylvestris]279002538 (2)

Alignment

This contig is upended


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rJMFF010L21+                                   CGTCCGCCCCCACCGCCGCGGTTGCAACAACCATG
                      ____________________________________________________________
consensus                                      CGTCCGCCCCCACCGCCGCGGTTGCAACAACCATG
 
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rJMFF010L21+          GACTANTACACCAAGCAACTCCTCAAGCTGCAGCCTCAAGATCATCATCGTCAGCATCAT
                      ____________________________________________________________
consensus             GACTANTACACCAAGCAACTCCTCAAGCTGCAGCCTCAAGATCATCATCGTCAGCATCAT
 
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rJMFF010L21+          CTCAACTTCTTCCTAGACCTACCTAATTACAAAGATCATGTCGATAGCCACGGCGGCGAG
                      ____________________________________________________________
consensus             CTCAACTTCTTCCTAGACCTACCTAATTACAAAGATCATGTCGATAGCCACGGCGGCGAG
 
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rJMFF010L21+          TCCCAAACCCTTCAGCTCTTCCCTCTTAGAAGCGGCGGCTCTGAAAATGAAAACGACAAG
                      ____________________________________________________________
consensus             TCCCAAACCCTTCAGCTCTTCCCTCTTAGAAGCGGCGGCTCTGAAAATGAAAACGACAAG
 
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rJMFF010L21+          GACACGGCGGAAGCCGCCATGAACACCACCTTCGTAAACCCTCATTACCAGTTCTTTGAG
                      ____________________________________________________________
consensus             GACACGGCGGAAGCCGCCATGAACACCACCTTCGTAAACCCTCATTACCAGTTCTTTGAG
 
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rJMFF010L21+          TTTCTTCCGCTCAAGAATTGAAAAGTCCAAAAATTCCCAAAAGTAAAAAAAATTAATGGT
                      ____________________________________________________________
consensus             TTTCTTCCGCTCAAGAATTGAAAAGTCCAAAAATTCCCAAAAGTAAAAAAAATTAATGGT
 
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rJMFF017N22+                                TTCATGGGAAGAATTGAGGATGATGACAATGAAAAGCT
rJMFF010L21+          TGAGATGGATTTGATGTAACAATTCATGGGAAGAATTGAGGATGATGACAATGAAAAGCT
                      ____________________________________________________________
consensus             TGAGATGGATTTGATGTAACAATTCATGGGAAGAATTGAGGATGATGACAATGAAAAGCT
 
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rJMFF017N22+          AGCTAGATTATAGTAGTGGTATTAGTAGTAATTTCATAGGTGTTAAACGTTGACAGTAGT
rJMFF010L21+          AGCTAGATTATAGTAGTGGTATTAGTAGTAATTTCATAGGTGTTAAACGTTGACAGTAGT
                      ____________________________________________________________
consensus             AGCTAGATTATAGTAGTGGTATTAGTAGTAATTTCATAGGTGTTAAACGTTGACAGTAGT
 
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rJMFF017N22+          GAGTAGGTCATGTGTTATCTATGTTTAGATTTGATATTTGGGTGTTCACTTTATGAGAGA
rJMFF010L21+          GAGTAGGTCATGTGTTATCTATGTTTAGATTTGATATTTGGGTGTTCACTTTATGAGAGA
                      ____________________________________________________________
consensus             GAGTAGGTCATGTGTTATCTATGTTTAGATTTGATATTTGGGTGTTCACTTTATGAGAGA
 
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rJMFF017N22+          GAGAGAGAGAGAAAAGGAGAGAGAGAGACAGAGAGAGATGAGAGTCCCAATGAGGTGGCT
rJMFF010L21+          GAGAGAGAGAGAAAAGGAGAGAGAGAGACAGAGAGAGATGAGAGTCCCAATGAGGTGGCT
                      ____________________________________________________________
consensus             GAGAGAGAGAGAAAAGGAGAGAGAGAGACAGAGAGAGATGAGAGTCCCAATGAGGTGGCT
 
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rJMFF017N22+          GTAATGGAATTTGATGTTCAAGGGTTTGACTGACTCAATGTTTCAAAAT           
rJMFF010L21+          GTAATGGAATTTGATGTTCAAGGGTTTGACTGACTCAATGTTTCAAAATTGGAATATAAT
                      ____________________________________________________________
consensus             GTAATGGAATTTGATGTTCAAGGGTTTGACTGACTCAATGTTTCAAAATTGGAATATAAT